Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i01
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   SFWKNHLFFPLLYLVFKTYSRVETQLLTF 90
           SF +   F  ++  +FK  S++E + +TF
Sbjct: 401 SFLERERFLGIINNIFKNMSQIEREAITF 429


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   SFWKNHLFFPLLYLVFKTYSRVETQLLTF 90
           SF +   F  ++  +FK  S++E + +TF
Sbjct: 401 SFLERERFLGIINNIFKNMSQIEREAITF 429


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 361 DQHYFTRLHYLTHLGGIISIS 423
           + HY +  H  THL G ++++
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVN 140


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 138 DFSFEKFSAKDLKDPAKRKKLRFNTRVRFEDEVQKWEEQVVLPE 7
           D+    +  +D ++  +RKK         E+E QK +EQ + PE
Sbjct: 115 DYEDNDYGNQDNRND-RRKKTFAAREDNDEEEAQKPKEQYIPPE 157


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 317 ITTKVPPTSRTGMLSSLVSTGTP 249
           IT + PP   T      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,876
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)