Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h22
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    29   0.91 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    28   1.2  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.5  

>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 156 NRKQVIRKKIKLKRQINRRKKSNLKIKQK 70
           +RK V R +    RQIN  KKSNLK+ +K
Sbjct: 529 SRKAVWRMRPASVRQINFLKKSNLKLDEK 557


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 553 RIQELCSCENTPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTP 374
           R QE         +TGD +      D     T +S + +T +GY ++ D R   I + + 
Sbjct: 74  RAQEAAEAAANGGSTGDDVNATNANDATVPATVSSEVTHTSEGYADSNDSRPSSISNSSE 133

Query: 373 TNCPV 359
           +  P+
Sbjct: 134 SPAPI 138


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 400 PFYRKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLL 510
           PFY +    LYE IL  K  Y +Y + +   ++S LL
Sbjct: 396 PFYSENPMKLYENILEGKVNYPSYFSPASIDLLSHLL 432


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 475 NLSVTGIVSDLLYCKVY--FHRSTIPVSYRTFPFVQPSWFLG 594
           NL++T +V   + C +Y   H   IP +Y TF    PSW  G
Sbjct: 788 NLTITEVVKAEVTC-LYDDIHEGIIP-AYNTFVEHLPSWVAG 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,545
Number of Sequences: 5004
Number of extensions: 51755
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)