Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h22
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    31   0.72 
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    31   1.3  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   3.9  
02_01_0475 + 3422629-3422695,3422960-3423216                           29   5.1  
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708...    28   8.9  

>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
            24030162-24030455,24031490-24031717,24031827-24032006,
            24032079-24032238,24032591-24032617,24033426-24033613,
            24034269-24034532,24035123-24035218,24035311-24035399,
            24035473-24035620,24035842-24036051,24036141-24036440,
            24037906-24038248,24038747-24038952,24039071-24039273,
            24040021-24040117,24040148-24040222,24040328-24040602,
            24041116-24041256,24041469-24042339,24042481-24042520,
            24042605-24043050
          Length = 1808

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 23/88 (26%), Positives = 39/88 (44%)
 Frame = -1

Query: 598  RVPKTTKVERMGKYDRIQELCSCENTPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYD 419
            R  K  K E   +  R +E    E+T    GD+ +   PK+ H ++  T + K  H+  D
Sbjct: 951  RPKKDDKAEAKAEDIRPKEGDEAEDTRPKEGDEAEDTRPKEDHEAEDST-HPKEDHEAED 1009

Query: 418  NTCDKRDRKILSVTPTNCPVPVAMEKIL 335
            +T  K D +          + + +EKI+
Sbjct: 1010 STHPKEDHEAEGDDEDQMKLQMEVEKII 1037


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 541 LCSCENTPYNTGDQIQFQLPKDFHNSDTYT-SNLKYTHKGYDNTCDKRDRKILSVTPTN 368
           +CS   T ++  +    +L + +HNS  +  ++L + H  Y N  +K+    L V PTN
Sbjct: 31  ICSISGT-HSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVFLHVGPTN 88


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 409 RKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLLYCKVY 525
           R + +   EC  N  CK   Y NLS  G ++D   C V+
Sbjct: 353 RSFDQCAAECSSNCSCKAYAYANLSSGGTMADPSRCLVW 391


>02_01_0475 + 3422629-3422695,3422960-3423216
          Length = 107

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 153 RKQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 40
           +K+  +KK K K++  ++KK   K K+K N  +S  TN
Sbjct: 43  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSAVTN 80


>09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,
            7088754-7089131,7089357-7089821,7090022-7090127,
            7090219-7090294,7090407-7090648,7090824-7090904,
            7091013-7091205,7091336-7091558,7091611-7091646,
            7091694-7091790
          Length = 1078

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 631  FTKINANELKIRVPKTTKVERMGKYDRIQE----LCSCENTPYNTGDQIQFQLPKDFHNS 464
            F    A+ L  ++P+  K +R    D + +    + +C    +N    I   +   +HN+
Sbjct: 836  FGTFRADHLSSKIPEQAKADREAFSDTLSKSAAVMATCAALLFNAALNIFLNVQAIYHNN 895

Query: 463  DTYTSN 446
            +T T+N
Sbjct: 896  NTSTNN 901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,321
Number of Sequences: 37544
Number of extensions: 278350
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)