Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h21
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    29   0.98 
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   1.7  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.0  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   3.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   6.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.9  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.1  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -3

Query: 732 AYHGNRXENFYTI-LNFGLQQHLNKNTSL--GNGVYLSPELS 616
           AYHG+R +N+Y +  +FG ++ L + +    G G+YL  +++
Sbjct: 100 AYHGHRPKNYYRLNPHFGNEEDLKELSDALHGKGMYLMVDVA 141


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 753 KNHNVFYAYHGNRXENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSH 595
           K HN   +++GNR    ++I+N GL  +L K+ +      L+ +  AT  + H
Sbjct: 339 KRHNSSQSFYGNRSTTNFSIINSGL--YLKKDAAKN---LLAKQFDATYSYYH 386


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 533 SHKATQDK*PPIQLAPHPKP 592
           SHKAT D  PP +  P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 504 N*SLRVHQPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 620
           N   R  +P++    +IS LR +N PPI+  H+  +L  +
Sbjct: 27  NPMFRSLRPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 500 W*LIPSGASTTSHKATQDK*PPIQLAPHPK 589
           W  +PSG +T S +A QDK    +L  H K
Sbjct: 523 WNNVPSGDNTLSTEALQDKKKSEELTAHSK 552


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 726 HGNRXENFYTILNFGLQQHLNKNTSLGNGV-YLSPELSATIPHSHGGFGWGASCIGGHLS 550
           H +  + ++   N      L K   +G  V +L+   +  IPH  GG G G  C+  HL+
Sbjct: 733 HEHGGQVYFDGANMNAMVGLCKAGDIGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLA 792


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 588  FGWGASCIGGHL-SCVALCEVVDAPEGINYQKPVSNEGDGLY 466
            F W       HL SCV  C+++   +  NY+ P+ ++   LY
Sbjct: 1106 FDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLY 1147


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 534 RTRLHKISDLRYNSPPIRSLHDCEVLSHLVLATGILHYPAKYSCSNAVVSQN*ESYKSSP 713
           RT  H I  L  N     S+H C++   +   T    YP+K + SN  VS +  S+ S  
Sbjct: 338 RTITHFIKKLVCNEC---SMHPCDIEEIIAWRTLNSLYPSKATLSNNFVSTSDLSFWSRE 394

Query: 714 NDFRDTHKIH-YDFWTVLSTL 773
              R   K + + FW   S L
Sbjct: 395 YFVRSKGKSYLHCFWCSASWL 415


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 155 LGYNSTIESWTWNWMPLIH*LDWIA 81
           L Y S +E  T+N  P+IH L +IA
Sbjct: 6   LDYLSALEDLTFNSKPIIHTLTYIA 30


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 345 MRVVSRKPTDNGFSLSH 395
           MR+ S  P+ NGFS++H
Sbjct: 457 MRLSSEPPSSNGFSIAH 473


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 510 SLRVHQPLRTRLHKISDLRYNSPPIRSLHDCE 605
           S+ +H   RT  H     R+N   I SL +CE
Sbjct: 165 SMDIHSRYRTEAHSDVTARFNERFILSLGNCE 196


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 68  IKYVRQSNPVNESKASNSKSMILLYCY-TLVLARAMSI 178
           +KY++  +   ESK SN    IL   Y + VLA A S+
Sbjct: 877 LKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSV 914


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 636 ILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLST 770
           I H   + SC  A V    ESY+ SP        + YD W V  T
Sbjct: 534 IYHAALEASCEIAQVEGTYESYEGSP---ASQGILQYDMWNVNPT 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,534
Number of Sequences: 5004
Number of extensions: 74334
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)