Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h21
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.6  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 642  HYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTV 761
            H P  YSC    V Q  +   SSP      +  + D  TV
Sbjct: 1267 HAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYRDAVTV 1306


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 432 HLLAYDQSFHLYKVHHLHWRLAF 500
           H +AY +      +HH HW L +
Sbjct: 194 HRVAYWREDIGINLHHWHWHLVY 216


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 576 PPIRSLHDCEVLSHL 620
           PPIR + DC   S L
Sbjct: 418 PPIRKISDCSTTSSL 432


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 725 TEIVXRTFIRFSILAYNSI*TRILRWVMEYTCRQ 624
           T +  RT   +  L +NS    I   + ++TCRQ
Sbjct: 458 TTLQTRTMHPYDHLVWNSWMPSIRGAIQQWTCRQ 491


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -3

Query: 555 LSCVALCEVVDAPEGINYQKPVSNEGDGLYKDG 457
           + C+  C++     G N     S++ DG   +G
Sbjct: 1   MGCLCECDLATPRTGTNCSSGSSSDSDGQTDEG 33



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 325 PYVKSQRCGLFRVNQ 369
           P  K+Q+C + R+N+
Sbjct: 54  PCTKNQQCSILRINR 68


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 325 PYVKSQRCGLFRVNQ 369
           P  K+Q+C + R+N+
Sbjct: 103 PCTKNQQCSILRINR 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,852
Number of Sequences: 438
Number of extensions: 5497
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)