Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h20
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL731560-4|CAI40868.1| 1167|Homo sapiens potassium large conduct...    30   9.2  
AL731560-3|CAI40869.1| 1225|Homo sapiens potassium large conduct...    30   9.2  
AL731556-4|CAI14073.1| 1167|Homo sapiens potassium large conduct...    30   9.2  
AL731556-3|CAI14075.1| 1225|Homo sapiens potassium large conduct...    30   9.2  
AL627447-4|CAI16163.1| 1167|Homo sapiens potassium large conduct...    30   9.2  
AL627447-3|CAI16165.1| 1225|Homo sapiens potassium large conduct...    30   9.2  
AL157833-4|CAI39728.1| 1167|Homo sapiens potassium large conduct...    30   9.2  
AL157833-3|CAI39729.1| 1225|Homo sapiens potassium large conduct...    30   9.2  

>AL731560-4|CAI40868.1| 1167|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1167

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1093 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1138


>AL731560-3|CAI40869.1| 1225|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1225

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1151 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1196


>AL731556-4|CAI14073.1| 1167|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1167

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1093 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1138


>AL731556-3|CAI14075.1| 1225|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1225

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1151 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1196


>AL627447-4|CAI16163.1| 1167|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1167

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1093 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1138


>AL627447-3|CAI16165.1| 1225|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1225

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1151 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1196


>AL157833-4|CAI39728.1| 1167|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1167

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1093 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1138


>AL157833-3|CAI39729.1| 1225|Homo sapiens potassium large conductance
            calcium-activated channel, subfamily M, alpha membe
            protein.
          Length = 1225

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 541  NQQDELRSRKSKNLLETNAVT*THLIGNEKRLVSSDPQYQYKINKQIKP 395
            N+Q+  +SR+S++  + NA T  + +G EK+  + +P   Y  N QIKP
Sbjct: 1151 NRQNRPKSRESRD--KQNA-TRMNRMGQEKKWFTDEPDNAYPRNIQIKP 1196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,126,830
Number of Sequences: 237096
Number of extensions: 1536368
Number of successful extensions: 3532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3532
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)