Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h20
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.30 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    26   0.30 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.30 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   6.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   6.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = -3

Query: 599 HSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKRCYID---PSDWERETASILRST 429
           H C ++    +       +E A+  E+PK+ K +  K   +D   P+  ER    + +  
Sbjct: 341 HPCVMDCKVGVRTY--LESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 398

Query: 428 ISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSD 306
             V  +  + T T L FR    +L A   SS D    R+ +
Sbjct: 399 YMVWRETISSTAT-LGFRVEGIKL-AHGGSSKDFKTTRTRE 437


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = -3

Query: 599 HSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKRCYID---PSDWERETASILRST 429
           H C ++    +       +E A+  E+PK+ K +  K   +D   P+  ER    + +  
Sbjct: 256 HPCVMDCKVGVRTY--LESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 313

Query: 428 ISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSD 306
             V  +  + T T L FR    +L A   SS D    R+ +
Sbjct: 314 YMVWRETISSTAT-LGFRVEGIKL-AHGGSSKDFKTTRTRE 352


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = -3

Query: 599 HSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKRCYID---PSDWERETASILRST 429
           H C ++    +       +E A+  E+PK+ K +  K   +D   P+  ER    + +  
Sbjct: 575 HPCVMDCKVGVRTY--LESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 632

Query: 428 ISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSD 306
             V  +  + T T L FR    +L A   SS D    R+ +
Sbjct: 633 YMVWRETISSTAT-LGFRVEGIKL-AHGGSSKDFKTTRTRE 671


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 653 RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEK 519
           R+    +++TE +R   P       N TI+NN  Y   +    +K
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYKK 106


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 653 RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTES 537
           R+    +++TE +R   P       N TI+NN  Y   +
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNN 100


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 653 RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTES 537
           R+    +++TE +R   P       N TI+NN  Y   +
Sbjct: 295 RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNN 333


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYK 97


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYK 97


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNRTIHNNNNYK 97


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYK 97


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYK 97


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYK 97


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 590 CLEDNTTINNNGKYRTESAR 531
           C+ DN TI NNG    + A+
Sbjct: 236 CIFDNATIVNNGPEAAKMAK 255


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 301 RDRTERERSREPKIISSLSNKTIHNNNNYK 330


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 596 SCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNK 489
           S C +D     +  ++    A +  K K EKS   K
Sbjct: 578 STCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKK 613


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 170 TPLNDVPVNTNFK 132
           TPLN++P N  F+
Sbjct: 71  TPLNELPANKRFQ 83


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 170 TPLNDVPVNTNFK 132
           TPLN++P N  F+
Sbjct: 71  TPLNELPANKRFQ 83


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 290 RDRTERERSREPKIISSLLNNTIHNNNNYK 319


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 301 RDRTERERSREPKIISSLLNNTIHNNNNYK 330


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 301 RDRTERERSREPKIISSLLNNTIHNNNNYK 330


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 635 KEKTEFKRRIVPHSCCLEDNTTINNNGKYR 546
           +++TE +R   P       N TI+NN  Y+
Sbjct: 290 RDRTERERSREPKIISSLLNNTIHNNNNYK 319


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -3

Query: 608 IVPHSCCLEDNTTINNNGKYRTES 537
           ++ ++ C + N   NN  KY+ ++
Sbjct: 411 LIKNTRCAKSNNQNNNQNKYKNQA 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,439
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)