Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h15
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   6.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.1  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 4   KRSRGVYIKTKIVMKSVMDSPYISCXSPYVIYNLHLANYDMKLILIQY---EQTYILLIK 174
           KRS G Y   K++ KS +DS            N+H+  Y    + + Y      Y+ L+ 
Sbjct: 547 KRSSGKYFALKMIPKSSLDSLKKIKGLLLEKRNMHIQRYGPNTVKLYYAFDSGDYLCLVM 606

Query: 175 NFF 183
           ++F
Sbjct: 607 DYF 609


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 102 SPFSKLRYEININSIRTNIHTFNQEFFLN 188
           +PFSK  Y+I +++     HT   EF  N
Sbjct: 375 NPFSKSLYDIGLHAETDREHTMISEFLTN 403


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 398 NYVPKILVTDCLKGMLYL---TVSNESICLKETNV 303
           N+VP I++  C  G +YL   ++S+E +  K T++
Sbjct: 479 NHVPMIVIDQCDGGSIYLSKSSLSSEVVTSKSTSL 513


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 413 CLFSYNYVPKILVTDCLKGMLYLT 342
           CL S NY   IL   CL   LYL+
Sbjct: 52  CLSSCNYALSILHNICLASFLYLS 75


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -2

Query: 452 SAFIIWIKKYR*YCLFSYNYVPKILVTDCLKGMLYLTVSN-ESICLKETNV-APLVVIL 282
           S ++ WI +   + ++  +  P + V D  KG++Y++  N  S+ L+E ++ + L +IL
Sbjct: 495 SLWLDWIVENLDHTVYVDSITPPVFVIDHSKGVIYVSDRNGNSLTLEEDSLFSTLRIIL 553


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 266 FVY*ISYRCLSNSTKKVFIYSYSSFFI 186
           F+  ISY  L  S+ K+F +++  FF+
Sbjct: 231 FLKAISYFLLDGSSSKIFYFNWLGFFV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,420
Number of Sequences: 5004
Number of extensions: 52860
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)