Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h14
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    31   0.23 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    30   0.31 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    30   0.31 
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    29   0.54 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   1.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.9  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   5.0  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   5.0  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   5.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   5.0  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   5.0  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   6.6  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   6.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   8.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.7  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   8.7  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +3

Query: 150 FVLLLVSNTLWSV*NEIDVSYMDEVISIAPSDV 248
           F+++L+SNTL+   +E+D S ++ ++S+   D+
Sbjct: 207 FLVVLLSNTLYDSIDELDFSVLNSIVSLDAKDI 239


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 289 PLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTDHNVFETSS-KTKRSFF 137
           PL      D  ++ST     E TS  Y TS+S Y   +  ETSS KTK S F
Sbjct: 345 PLRKIYDTDIKNVSTKKKDFEETSRDYYTSLSRYLSKSEKETSSDKTKESKF 396


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 310 KIPTNPSPLPMETSMDSYHISTSLGAMEMTSSMYDT 203
           K P  PSPL +    D YH    +GA E     YDT
Sbjct: 238 KQPNLPSPLSLHFHQDYYHNLHRVGAFEPFDPYYDT 273


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 270 DVSIGNGDGFVGILICEIFDRITRQDINLLKNGRLFSSFSI-LNGSIKFLTDVVSGSIAS 446
           D  +G+G   V I+  E+  R      N +    + + + + +  ++KF+TDV+S S+ S
Sbjct: 88  DKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDS 147

Query: 447 ESNE 458
              E
Sbjct: 148 LGKE 151


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -2

Query: 301 TNPSPLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTDHNVFETSSKTKRS 143
           T  +P P   S   +   TS G      ++ DT+ S  T HN F+    T RS
Sbjct: 707 TEEAPKPEVDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRS 759


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 331 RSKISQIKIPTNPSPLPMETSMDSYHISTSLGAMEMTSSMYDTSIS 194
           RS ++Q K+P +  P+ +E   D Y +  S      T ++YD  IS
Sbjct: 129 RSNLAQSKLPVDLVPIRLEIDADRYKLRDS-----FTWNLYDKCIS 169


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 685 KDVQNKMPEELSVPTRQAVSSVEVNYSVSCKQNVSFSSTKINS 557
           KDV    P   +  T    SS+E +YS   K  V  SS+K+ S
Sbjct: 139 KDVTKSHPATNANFTADFESSIEESYSTENKSPVILSSSKVPS 181


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 214 MYDTSISFYTDHNVFETSSKTKRSFFNSVRGFLTNRKS 101
           +YDTSI FY  H  F    K   S+     G L  + +
Sbjct: 353 IYDTSIKFYMKHGRFGLLEKVCESWTKQFLGSLEKQNN 390


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 664 PEELSVPTRQAVSSVEVNYSVSCKQNVSFSSTKINSLHS 548
           P E+    + A  +  +   V+ +QN+S SS K NS+HS
Sbjct: 165 PAEVFDRKQSAEINSPIEKDVNPQQNISDSSIKNNSIHS 203


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 685 KDVQNKMPEELSVPTRQAVSSVEVNYSVSCKQNVSFSSTKINS 557
           K+  N + +E S P+ QAV       S   K+ V+FSS   NS
Sbjct: 8   KEASNMLLQEPSTPSSQAVGLSSSPSSSIRKKKVNFSSELENS 50


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 202 SISFYTDHNVFETSSKTKRSFFNSVRGFL 116
           S S YTD+N  +   + KRSFF S R  L
Sbjct: 500 SSSSYTDNNKQKEPLEEKRSFFPSFRSSL 528


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 551 LVELYS*KGFNSNSIQRLEKI 489
           L ELYS  G  SNS Q +EKI
Sbjct: 404 LKELYSVSGMKSNSSQVMEKI 424


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 693 SILKMYKTRCLKSCRFPQDKRFRP*KLIIAFLVSKMYR 580
           ++L  YKT  LK C F   K   P +  ++++ S+ YR
Sbjct: 155 NLLVDYKTGILKLCDFGSAKVLVPSEPNVSYICSRYYR 192


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = -3

Query: 732 CDETRTITGL---LFCSILKMYKTRCLKSCRFPQD 637
           CD    I G    L+C    MY T C+     PQD
Sbjct: 85  CDALNYIKGFRYQLYCESKSMYTTHCVIHVAVPQD 119


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 691  NSKDVQNK-MPEELSVPTRQAVSSVEVNYSVSCKQNVSFSSTKINSLHSSNFIVKKDSIQ 515
            N+ D Q K  P+E S+P   + +S +V+     K +    S      H+S   + + ++Q
Sbjct: 848  NTDDTQAKEAPKEASIPDNASTASTKVSNDSHLKPDADKKSVSSELTHASKPSLDEKTMQ 907


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 586 VSFSSTKINSLHSSNFIVKKDSIQTLFRGWRKSPTPNLGTSAYSLDSEAIEPLTT 422
           ++F  T +NSL SSN +    S     +G +K+PT N   +  S  +  ++ + T
Sbjct: 116 IAFQLT-VNSLSSSNQLSVIRSSTNTVKGRKKNPTTNSNWNGISHVNALLDAIIT 169


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 445 EAIEPLTTSVRNLMEPFKIEKEENR 371
           E ++PL  +    +EPF I++E +R
Sbjct: 247 EQLQPLILNETTFVEPFSIDRESHR 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,510
Number of Sequences: 5004
Number of extensions: 60688
Number of successful extensions: 189
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)