Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h14
         (749 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC092412-1|AAH92412.1| 1265|Homo sapiens shugoshin-like 2 (S. po...    31   4.4  
AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein.               31   4.4  
AK057940-1|BAB71617.1|  568|Homo sapiens protein ( Homo sapiens ...    31   4.4  
AC080164-1|AAY24264.1| 1103|Homo sapiens unknown protein.              31   4.4  

>BC092412-1|AAH92412.1| 1265|Homo sapiens shugoshin-like 2 (S. pombe)
            protein.
          Length = 1265

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 607  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 431
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 1102 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1161

Query: 430  LTTS 419
            L+ S
Sbjct: 1162 LSVS 1165


>AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein.
          Length = 1265

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 607  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 431
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 1102 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1161

Query: 430  LTTS 419
            L+ S
Sbjct: 1162 LSVS 1165


>AK057940-1|BAB71617.1|  568|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25211 fis, clone REC08060. ).
          Length = 568

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 607 SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 431
           SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 405 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 464

Query: 430 LTTS 419
           L+ S
Sbjct: 465 LSVS 468


>AC080164-1|AAY24264.1| 1103|Homo sapiens unknown protein.
          Length = 1103

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 607  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 431
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 944  SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1003

Query: 430  LTTS 419
            L+ S
Sbjct: 1004 LSVS 1007


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,364,643
Number of Sequences: 237096
Number of extensions: 1808563
Number of successful extensions: 4040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4038
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)