Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h08
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    29   4.0  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   5.3  
08_02_0496 - 17807720-17808078,17808503-17809139                       28   9.2  

>02_01_0190 +
           1276808-1278214,1278450-1278743,1278815-1279087,
           1279204-1279336,1279425-1279551,1279788-1280284,
           1280578-1280642,1280722-1280823,1281020-1281162,
           1281761-1281816,1282214-1282869,1282975-1283165,
           1283280-1283574,1283738-1283778,1284082-1284104,
           1284173-1284369,1284472-1284581,1285309-1285639,
           1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +2

Query: 476 PTSSPASKRAIFSS---THSSCRVKSKLNNNSKSVYATFVDNLFRLHVSSATTGIWLKVA 646
           P+ SP+ +R+  +S   T SS   ++  NN + S  +  + +LFR    S   G  L  A
Sbjct: 90  PSPSPSPRRSTSASPSATLSSLVSRTFSNNAASSSSSKPLPSLFRGVRPSPKPGAALAAA 149

Query: 647 RRVGVATVTPENRNMAP--SETTVTSKLLTEGIGS 745
                A +TP    +    S +    KLL EG GS
Sbjct: 150 AAASRAVLTPHAAAIKSRRSASAPIEKLLDEGSGS 184


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 441 WSYACGEPLQIVNTRDGSSIAIPRYRIQPLGPSIILRNGSSSNVTFGP 298
           WS +  + + +V   +GSSI I   RI  +G S  L NG   N    P
Sbjct: 286 WSISAWKAISVVFPENGSSIIIVTTRISDVGRSCCL-NGIDRNFEMEP 332


>08_02_0496 - 17807720-17808078,17808503-17809139
          Length = 331

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 202 NCNALRKKH*AQQRNSKAR*YWDTEVRAAVHCRSKSHIATRS 327
           NC+A RKKH  Q   +KA+      ++ + + +    IAT S
Sbjct: 64  NCDAARKKHPKQMTTNKAQEPLLEGIKVSANIKKAQEIATSS 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,950
Number of Sequences: 37544
Number of extensions: 356336
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)