Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h08
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    29   0.047
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = -2

Query: 624 VVAEETWS-RNKLSTKVAYTDFELLFN--FDLTRQDEWVLENIALLEAGEEV 478
           VV E  WS + + +  V ++  +++ +  +D+  +D+W + +IALL+  +++
Sbjct: 216 VVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDI 267


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
 Frame = -2

Query: 726 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 589
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
 Frame = -2

Query: 726 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 589
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
 Frame = -2

Query: 726 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 589
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 195 NCASNSKFDDPHNPPLVYETQ*FIVHQLP 109
           N   +S+  + HN PLV ET   +V   P
Sbjct: 23  NAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 195 NCASNSKFDDPHNPPLVYETQ*FIVHQLP 109
           N   +S+  + HN PLV ET   +V   P
Sbjct: 23  NAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 TEFRTLMVDYEGHQIYYLMR 191
           T F+TL ++ E H  +YL R
Sbjct: 16  TRFQTLELEKEFHYNHYLTR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,163
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)