Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h05
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   1.7  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    23   6.9  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    23   9.1  

>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 232 LSFLK*IV*YLIFVLFLTLWLY 167
           L+++  ++ Y IFV+F+ +W+Y
Sbjct: 268 LNYVNTVIVYPIFVIFVFVWIY 289


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 104 SCTPIDMSAMDFL--TADCVIVRW 39
           SC PIDM    FL  + D ++  W
Sbjct: 173 SCIPIDMDQFGFLPESMDDILTNW 196


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 104 CQNTFFVIKCHK 139
           CQNT   +KCHK
Sbjct: 428 CQNTTDFMKCHK 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,694
Number of Sequences: 5004
Number of extensions: 16081
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)