Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h05
         (292 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089546-1|AAL90284.1|  419|Drosophila melanogaster LD22634p pro...    26   6.8  
AE014296-1308|AAF50524.1|  419|Drosophila melanogaster CG12262-P...    26   6.8  
BT022454-1|AAY54870.1|  135|Drosophila melanogaster IP05788p pro...    26   9.0  
BT022433-1|AAY54849.1|  135|Drosophila melanogaster IP05688p pro...    26   9.0  

>AY089546-1|AAL90284.1|  419|Drosophila melanogaster LD22634p
           protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 61  AVKKSMADISIGVQLSKYFFRNKMSQKKQMQRN*FYTA 174
           AV+  +AD++IGV+ S+  +R    +  Q +RN +Y +
Sbjct: 314 AVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYAS 351


>AE014296-1308|AAF50524.1|  419|Drosophila melanogaster CG12262-PA
           protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 61  AVKKSMADISIGVQLSKYFFRNKMSQKKQMQRN*FYTA 174
           AV+  +AD++IGV+ S+  +R    +  Q +RN +Y +
Sbjct: 314 AVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYAS 351


>BT022454-1|AAY54870.1|  135|Drosophila melanogaster IP05788p
           protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 KCHKKNKCKETNFIQPKCQK 187
           K +KKNKCK T  ++ K +K
Sbjct: 105 KLNKKNKCKRTRKVEKKKKK 124


>BT022433-1|AAY54849.1|  135|Drosophila melanogaster IP05688p
           protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 KCHKKNKCKETNFIQPKCQK 187
           K +KKNKCK T  ++ K +K
Sbjct: 105 KLNKKNKCKRTRKVEKKKKK 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,406
Number of Sequences: 53049
Number of extensions: 161618
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 485663193
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)