Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14h05
(292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81484-5|CAB03972.2| 293|Caenorhabditis elegans Hypothetical pr... 26 3.9
AL033510-1|CAA22064.2| 339|Caenorhabditis elegans Hypothetical ... 26 3.9
Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical pr... 26 5.2
Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical pr... 26 5.2
Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical pr... 26 5.2
Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical pr... 26 5.2
Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical p... 26 5.2
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 26 5.2
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 26 5.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 25 6.8
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 25 9.1
U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine rece... 25 9.1
AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical ... 25 9.1
>Z81484-5|CAB03972.2| 293|Caenorhabditis elegans Hypothetical
protein C47A10.8 protein.
Length = 293
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 248 NYAYLIKFFKINSLIFDFCIISDTLAV*N*FLCICF 141
N A I FKI+S+ F I+ AV N +C+ F
Sbjct: 22 NIAVFISTFKISSMKSSFGTINKNQAVCNTIMCLIF 57
>AL033510-1|CAA22064.2| 339|Caenorhabditis elegans Hypothetical
protein Y40H7A.1 protein.
Length = 339
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 248 NYAYLIKFFKINSLIF 201
NY YL+ F INSL+F
Sbjct: 48 NYVYLMMAFSINSLVF 63
>Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 164 N*FLCICFFCDILL 123
N +C+C FCD+LL
Sbjct: 41 NMLICVCCFCDLLL 54
>Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical
protein K06B4.1 protein.
Length = 371
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 131 CHKKNKCKETNFIQPKCQ 184
C K NKC E I PKC+
Sbjct: 41 CQKFNKCYEKFIILPKCK 58
>Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical
protein M01B2.7 protein.
Length = 302
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 164 N*FLCICFFCDILL 123
N +C+C FCD+LL
Sbjct: 41 NILICVCCFCDLLL 54
>Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 164 N*FLCICFFCDILL 123
N +C+C FCD+LL
Sbjct: 41 NMLICVCCFCDLLL 54
>Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical
protein T26E4.15 protein.
Length = 302
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 164 N*FLCICFFCDILL 123
N +C+C FCD+LL
Sbjct: 41 NILICVCCFCDLLL 54
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 119 FVIKCHKKNKCKETNFIQPKCQK*Y 193
F K H K K +T+F P+C++ Y
Sbjct: 658 FQKKLHSKEKSTQTDFGYPRCEEAY 682
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 119 FVIKCHKKNKCKETNFIQPKCQK*Y 193
F K H K K +T+F P+C++ Y
Sbjct: 658 FQKKLHSKEKSTQTDFGYPRCEEAY 682
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 98 CNCQNTFFVIKCHKKNKCKETNFIQPKCQK 187
C+C+ F ++C ++ KC E + + KC K
Sbjct: 1938 CDCKPGFKGLRCEQETKCSECS-NEAKCIK 1966
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 89 Q*ACNCQNTFFVIKCHKKNKCKET 160
Q CN N F + C K +C +T
Sbjct: 422 QPGCNAMNQIFHVDCFKCGQCSKT 445
>U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein22 protein.
Length = 306
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 248 NYAYLIKFFKINSLIFDFCIISDTLAV*N*FLCICF 141
N A +I FK SL C++ +A N F CI F
Sbjct: 25 NLAIVIITFKYKSLQSRCCVLIGIMAFFNLFYCIYF 60
>AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical
protein R02D3.7 protein.
Length = 479
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +2
Query: 101 NCQNTFFVIKCHKKNKCKETNFIQPKCQK*YKN 199
+CQ IK KK++ T+F+ C+ +++
Sbjct: 44 DCQELIAAIKSEKKSRASSTSFVCCHCRMIFRS 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,702,899
Number of Sequences: 27780
Number of extensions: 94755
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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