Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h04
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   1.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    24   2.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   3.1  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   4.0  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    23   4.0  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    23   7.1  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    23   7.1  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    23   7.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    22   9.3  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    22   9.3  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 SDQQIVIVMEVFLNKIISREGA*TRPPSLD 39
           SD ++   ++V   K+  +  A T+PPSLD
Sbjct: 622 SDNKLGATVQVVEQKVDDKADALTKPPSLD 651


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 7   FAFLNIIALFLSRL 48
           F+FLN +A++LSRL
Sbjct: 541 FSFLNFVAIWLSRL 554


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 13  FLNIIALFLSRLGGLVYAPSREIILFRNTSITITICWSDVWLVV 144
           F+ I+ LFL R   ++      ++  + T  +  I WSDV L V
Sbjct: 266 FICIVLLFLGRAVNILAPRQLGVLTEKLTKHSEKIPWSDVILFV 309


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 100 SITITICWSDVWLVVPSCWN 159
           ++ IT+  SD+WL +  C N
Sbjct: 250 AVFITMDTSDIWLALSKCLN 269


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 23  LLHFFYLDWEAWFMLPLEKLSYLGTLPSQSQFVGQM 130
           L+ F   D+   F+    ++  L TLP+  ++ GQM
Sbjct: 213 LVGFHTYDYARHFLSACSRILNLSTLPNGVEYNGQM 248


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 26  LHFFYLDWEAWFMLPLEKLSYL 91
           +HFFY +++    + LEKL  L
Sbjct: 321 IHFFYCNFDDPIYVKLEKLDIL 342


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 57  GLCSLSRNYLI*EHFHHNHNLLVRCMASGTI 149
           G CS+  NY+  EHF      +V  MA+G I
Sbjct: 359 GTCSIGVNYMWNEHFGIG---VVEYMAAGLI 386


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 530

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 13 FLNIIALFLSRLGGLVYAPS 72
          F  +   FLS +G L YAP+
Sbjct: 5  FATVALAFLSTVGALPYAPN 24


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   IISPF*ILLHFFYLDW 49
           + SP+ IL H+  LDW
Sbjct: 563 LASPYAILAHYQELDW 578


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 146 GTTSHTSDQQIVIVMEVFLNKIISREGA*TRPPSLDRKSAII 21
           G    T+D  I  V+++    +I      T PP + RK  I+
Sbjct: 116 GAKKLTNDLYIKAVLKLCPELVIPLNDTPTSPPGVKRKPKIV 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,338
Number of Sequences: 5004
Number of extensions: 12031
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)