Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h04
         (179 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    18   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    18   9.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 34  FLSRLGGLVYAPSREIILFRNTSITITICWSDVW 135
           F   L GLV  P   I          T  W DVW
Sbjct: 89  FADCLVGLVVMPFSAIYEVLENRWLFTTDWCDVW 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 165  NLVPTRWYH 139
            +LVP  WYH
Sbjct: 1523 DLVPATWYH 1531


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +3

Query: 96  HFHHNHN 116
           H++HNHN
Sbjct: 424 HYNHNHN 430


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 156 PTRWYH*PYI*PTNCDCDGSVPK*DNFSRGSINQASQSR 40
           PTR+ H P+  P N           ++S   +N +  SR
Sbjct: 457 PTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSR 495


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 59 TRPPSLDRKS 30
          T PPS+DR S
Sbjct: 56 TIPPSIDRSS 65


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 124 SDVWLVVPSCW 156
           SDVW +   CW
Sbjct: 819 SDVWSMGIVCW 829


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 71  LEKLSYLGTLPSQSQFVG 124
           +++LS+LG+    S FVG
Sbjct: 257 VDQLSWLGSGQYISDFVG 274


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 71  LEKLSYLGTLPSQSQFVG 124
           +++LS+LG+    S FVG
Sbjct: 295 VDQLSWLGSGQYISDFVG 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,393
Number of Sequences: 438
Number of extensions: 894
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)