Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14h02
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 44 2e-05
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 44 3e-05
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 37 0.003
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 35 0.011
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 33 0.033
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.043
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 32 0.099
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.13
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.23
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 30 0.30
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.70
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.70
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 0.70
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.92
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 27 2.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 2.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 3.7
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 4.9
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 6.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 6.5
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 8.6
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 8.6
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 182 DLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDTVQEIEPANN 15
+L C IC+ D PCGH C C+MQ L S QC C+ + + +E A +
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKS 221
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACVMQ--HLLNSKQCFFCKAEIDTV 39
+ + +C IC + +PC H C C ++ L +K+C FCK E DTV
Sbjct: 76 EDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTV 127
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 200 SSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHL---LNSKQCFFCKAEI 48
SS +D C IC P + + PCGH C C++ L +++C C+ ++
Sbjct: 197 SSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = -2
Query: 218 RARSPGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKA 54
+ + P G S L C IC+ C H C C+ +L C C+A
Sbjct: 14 QTKIPSLKGLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRA 68
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 191 AQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEID 45
A+S +C IC CGH C C+ L +S C CK +++
Sbjct: 1086 AESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLN 1134
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.1 bits (72), Expect = 0.043
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 176 LCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDT 42
+CT RP T CGH C C++ L SK C C+ ++ T
Sbjct: 87 ICTEALQRPFTTH---CGHTYCYECLLNWLKESKSCPTCRQKLYT 128
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.9 bits (69), Expect = 0.099
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -2
Query: 176 LCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAE 51
+C IC CGHH C C + + C C A+
Sbjct: 253 VCLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQCGAD 294
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 179 LLCTICYARPADTAF-VPCGHHSCRACVMQHLLNSKQ 72
L C++C A+ VPCGH CR C + H++ S +
Sbjct: 744 LQCSLCMDVVAELLIIVPCGHFLCREC-LTHVITSSE 779
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 30.7 bits (66), Expect = 0.23
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Frame = -2
Query: 176 LCTICYARPADTAFVP------CGHHSCRACVMQH--LLNSKQCFFCKAEI 48
LC +C R + + CGH C AC+M L+N+ C CK I
Sbjct: 191 LCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 30.3 bits (65), Expect = 0.30
Identities = 26/68 (38%), Positives = 30/68 (44%)
Frame = -1
Query: 702 RSVPRTGSSAGDDVTSGARPYDEV*GLRQPERTAPRSDLSDSDGRGVSSVYSWRRGGQLR 523
R RT SS DD PY+E R P R A R D D D R S RR G+ R
Sbjct: 154 RDRDRTRSSRFDDDDDDRAPYEESRLSRAPSR-ASRYDDDDRDHRSRRRSRS-RRPGRSR 211
Query: 522 ASYSARSP 499
+ +R P
Sbjct: 212 SRRRSRRP 219
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 705 LRSVPRTGSSAG-DDVTSGARPYDEV*GLRQPERTAPRSDLSDSDGRGVSS 556
L S GS G +D+T+ D++ L E TA +SDL +S+ R + S
Sbjct: 3908 LESGTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELES 3958
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 173 CTIC---YARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEID 45
CTIC + D +PC H+ C+ L + C C+A +D
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.70
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Frame = -2
Query: 383 IMEPLFRIDGLDFMLGKTKDKSFSFYRY-PEDVAASDLKALEVAVDRLRVARD----IVT 219
+ + LF + D D F Y E V ++ + + R+R D ++
Sbjct: 636 VRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLA 695
Query: 218 RARSPGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHL 87
R Q +++C IC D C H CR CV +++
Sbjct: 696 SKRKTVDIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYI 739
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 182 DLLCTICYARPADTAFV-PCGHHSCRACVMQHLLNSK 75
D C++C F+ PCGH +C+ C M L+ K
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQEC-MSMLVGQK 638
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKA 54
C++C A CGH C +C+ +C C+A
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRA 295
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 173 CTIC-YARPADTAFVPCGHHSCRACVMQHL-LNSKQCFFC 60
C++C + R D CGH C C+ + + ++C C
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 391 FVTLSKCSGGNFGSSSPKRHP 453
FV S C+ GN G +P +HP
Sbjct: 526 FVKKSFCTEGNIGIKNPPKHP 546
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -1
Query: 744 SAGTASNKAVCDLLRSVPRTGSSAGDDVTSGARPYDEV*GLRQPERTAPRSDLSDSDGRG 565
S+ T S+ ++ ++P++GS+ D++ S + DEV L AP+ +++ D G
Sbjct: 564 SSETESDASILSPSAAIPKSGSAIKDELISPKKEIDEVLAL------APKWRINEFDETG 617
Query: 564 VSSVY 550
SVY
Sbjct: 618 --SVY 620
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = -2
Query: 173 CTICYARPADTAF-VPCGHHSCRACVMQHL 87
C ICY F C H C AC Q+L
Sbjct: 131 CEICYDEGCLPFFSAECDHEFCLACYRQYL 160
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 140 AFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDTVQEIE 27
A +PCGH+ C+ + C C+ E V +E
Sbjct: 52 AKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLE 89
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 454 ATGAKAT**WTLSVSGRPRAIRRAKLAPPPPRIHTR 561
ATG++ W + + PRA R+A P H R
Sbjct: 218 ATGSEKAPLWVIGYAKSPRAFRQANAHPDSMDFHWR 253
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 87 QMLHYAGSARMMSARHEGCVGGSRVAYGAEQVGLRPTGARGPRPRYYIACHSQTV 251
+++ +AGS +S C + GAE+ R RG P+Y I HS +
Sbjct: 310 RLISHAGSLTNLSK----CPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFI 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,519
Number of Sequences: 5004
Number of extensions: 55911
Number of successful extensions: 167
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -