Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14h02
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 43 2e-04
AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal embr... 43 2e-04
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical pr... 38 0.010
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 36 0.030
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 34 0.12
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 33 0.16
U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical pr... 33 0.16
AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical ... 33 0.16
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 33 0.21
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 33 0.21
U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 33 0.21
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 33 0.28
AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical ... 33 0.28
Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical p... 32 0.37
AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical ... 32 0.37
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 31 0.86
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 31 0.86
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 31 0.86
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical... 31 0.86
AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical ... 31 0.86
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 31 1.1
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical ... 30 2.0
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 29 2.6
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 29 2.6
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 29 2.6
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 29 2.6
AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical ... 29 2.6
AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical ... 29 4.6
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z35595-4|CAA84635.1| 170|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 28 6.1
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 28 8.0
AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical ... 28 8.0
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 28 8.0
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -2
Query: 224 VTRARSPGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEID 45
+ + P S+LLC +C V CGH C C+ +H +++ C CK ++
Sbjct: 39 INDVQQPVRRDLSSELLCPLCDQLFDRPVMVTCGHSYCEPCIERHTRDTRACVICKLDVG 98
Query: 44 TVQEIEPA 21
+ P+
Sbjct: 99 PFAAMIPS 106
>AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform a
protein.
Length = 439
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -2
Query: 224 VTRARSPGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEID 45
+ + P S+LLC +C V CGH C C+ +H +++ C CK ++
Sbjct: 39 INDVQQPVRRDLSSELLCPLCDQLFDRPVMVTCGHSYCEPCIERHTRDTRACVICKLDVG 98
Query: 44 TVQEIEPA 21
+ P+
Sbjct: 99 PFAAMIPS 106
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 182 DLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKA 54
D C +C + + CGH CR C+ HL +++C C+A
Sbjct: 5 DFCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCRA 47
>Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical
protein T02C1.2 protein.
Length = 275
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCK 57
+ D+LCTICY + + C H C+ C+ Q L +++C C+
Sbjct: 95 EDDVLCTICYDIIVEPHTLRCQHSFCKKCIDQCLPLTRKCPSCQ 138
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -2
Query: 185 SDLLCTICYARPADTAFVP-----CGHHSCRACVMQHLLNSKQCFFCKAEIDTVQEIEPA 21
S L C+IC+ D +P CGH C +C+ L + C C+ ++ QEI P
Sbjct: 30 SRLECSICFFDFDDFQHLPKLLENCGHTFCYSCLFDWLKSQDTCPMCREAVNMTQEI-PT 88
Query: 20 N 18
N
Sbjct: 89 N 89
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHHS-CRAC--VMQH 90
CTIC+A P T +PC H C C +M H
Sbjct: 564 CTICFAAPGSTTLLPCNHDGFCSDCCNMMDH 594
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = -2
Query: 356 GLDFMLGKTKDKSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDL 177
G+D G+T + R +D SD K L ++ D G G
Sbjct: 30 GMDSEAGETCAEMLLSSRNQDDEEQSDEKQLSQSLP------DTPKTPSEVGKKGKGKMK 83
Query: 176 LCTICYARPADTAFVP---CGHHSCRACVMQHL 87
C +C A+ +AF C H SCRAC+ Q++
Sbjct: 84 ECPLCAAKMPGSAFPKLKGCQHRSCRACLRQYV 116
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = -2
Query: 356 GLDFMLGKTKDKSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDL 177
G+D G+T + R +D SD K L ++ D G G
Sbjct: 30 GMDSEAGETCAEMLLSSRNQDDEEQSDEKQLSQSLP------DTPKTPSEVGKKGKGKMK 83
Query: 176 LCTICYARPADTAFVP---CGHHSCRACVMQHL 87
C +C A+ +AF C H SCRAC+ Q++
Sbjct: 84 ECPLCAAKMPGSAFPKLKGCQHRSCRACLRQYV 116
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = -2
Query: 356 GLDFMLGKTKDKSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDL 177
G+D G+T + R +D SD K L ++ D G G
Sbjct: 30 GMDSEAGETCAEMLLSSRNQDDEEQSDEKQLSQSLP------DTPKTPSEVGKKGKGKMK 83
Query: 176 LCTICYARPADTAFVP---CGHHSCRACVMQHL 87
C +C A+ +AF C H SCRAC+ Q++
Sbjct: 84 ECPLCAAKMPGSAFPKLKGCQHRSCRACLRQYV 116
>U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical
protein C52E12.1 protein.
Length = 925
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACV--MQHLLNSKQCFFCKAEID 45
Q + C IC + C H C CV M+ L NSK C C+++ID
Sbjct: 84 QKSIDCDICCKKNDVFGIGSCRHPVCAECVIRMRILGNSKTCPVCRSDID 133
>AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.8 protein.
Length = 244
Score = 33.5 bits (73), Expect = 0.16
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Frame = -2
Query: 365 RIDGLDFMLGKTKD---KSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSS 195
++D L+ + KT++ +S S ++ + K +++ D +TR ++
Sbjct: 105 KLDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERSAFDQELTRLKTSRLE 164
Query: 194 GAQSDLL----CTICYARPADTAFVP----CGHHSCRACV---MQHLLNSKQCFF 63
+S L CTICY + A VP CGH C CV ++ S +C F
Sbjct: 165 NEKSSLASRVECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQSFGSPKCPF 219
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHH-SCRACVMQHLLNSKQCFFCKAEIDTV 39
CTIC P ++ CGH C C + L C C+A + V
Sbjct: 386 CTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDV 431
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHH-SCRACVMQHLLNSKQCFFCKAEIDTV 39
CTIC P ++ CGH C C + L C C+A + V
Sbjct: 566 CTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDV 611
>U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical
protein C02B8.6 protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 176 LCTICYARPADTAFVPCGHHSCRACVMQHLLNSK-QCFFCKAEIDT 42
+CTIC+ P + C H C C+ + N C C+ D+
Sbjct: 4 ICTICHNTPNRPVRLDCNHEFCYICIKGSIQNDMLNCAVCRRPFDS 49
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACVMQ 93
+ +L CTIC D + CGH CR C ++
Sbjct: 2 EEELKCTICIRFFEDPIILTCGHSLCRMCALK 33
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHHSCRACVMQHL---LNSKQCFFCKAEID 45
C IC D CGH C C+ Q L N++ C CK+ ID
Sbjct: 26 CNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAID 71
>AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.9 protein.
Length = 244
Score = 32.7 bits (71), Expect = 0.28
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Frame = -2
Query: 362 IDGLDFMLGKTKD---KSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSG 192
+D L+ + KT++ +S S ++ + K +++ D +TR ++
Sbjct: 106 LDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERSAFDQELTRLKTSRLEN 165
Query: 191 AQSDLL----CTICYARPADTAFVP----CGHHSCRACV---MQHLLNSKQCFF 63
+S L CTICY + A VP CGH C CV ++ S +C F
Sbjct: 166 EKSSLASRVECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQSFGSPKCPF 219
>Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = -2
Query: 206 PGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDTVQE 33
P A D C +C+ + +PC H C+M L C C+ I + Q+
Sbjct: 324 PSVKCANGDDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCRCTIPSPQD 381
>Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = -2
Query: 206 PGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDTVQE 33
P A D C +C+ + +PC H C+M L C C+ I + Q+
Sbjct: 324 PSVKCANGDDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCRCTIPSPQD 381
>AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical
protein Y38F1A.2 protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSK 75
QS C IC A + CGH C C++Q+ SK
Sbjct: 100 QSSHECPICLANASFPVLTDCGHIFCCECIIQYWQQSK 137
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 31.9 bits (69), Expect = 0.49
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 299 PEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPADTA-----F 135
PE VA D+ E ++ A D + ++ G L C ICY P +T
Sbjct: 78 PEAVATPDVPKAENEKEKEDEADDTILTSKGTEMKG----LSCGICYD-PFNTGKRIPKV 132
Query: 134 VPCGHHSCRACVMQHLLNSK 75
PCGH C C+ + LLN++
Sbjct: 133 FPCGHTICLQCI-KKLLNTR 151
>Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical
protein C36A4.8 protein.
Length = 547
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 188 QSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSK--QCFFCKAEID 45
Q +L C IC + D C H CR+C+ + QC C++ +D
Sbjct: 16 QKELKCGICCSTYKDPILSTCFHIFCRSCINACFERKRKVQCPICRSVLD 65
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 266 LEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPADTAFVP---CGHHSCRACVM 96
L V ++ + + + + G + + CT+C + D + C H C+
Sbjct: 402 LPVGASKVEIDTFTIPTVYAKKTDGEEDEDTCTVCLSSFEDGESIQKLRCNHVFHPECIY 461
Query: 95 QHLLNSKQCFFCKAEIDTVQEI 30
+ L +K+C C+ EID + +
Sbjct: 462 KWLDINKRCPMCREEIDRPESL 483
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = -2
Query: 329 KDKSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGA----QSDLLCTIC 162
K + +++ A +L+ L + +R++ + ++ A + L C C
Sbjct: 726 KAREIEDFKFKRQRAEEELETLRIKYERVKRNESVPAQSGDQVLEEANRQMKETLTCPSC 785
Query: 161 YARPADTAFVPCGHHSCRACV 99
RP D + C H C C+
Sbjct: 786 KTRPKDCIMLKCYHLFCETCI 806
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = -2
Query: 329 KDKSFSFYRYPEDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGA----QSDLLCTIC 162
K + +++ A +L+ L + +R++ + ++ A + L C C
Sbjct: 729 KAREIEDFKFKRQRAEEELETLRIKYERVKRNESVPAQSGDQVLEEANRQMKETLTCPSC 788
Query: 161 YARPADTAFVPCGHHSCRACV 99
RP D + C H C C+
Sbjct: 789 KTRPKDCIMLKCYHLFCETCI 809
>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
protein Y57A10A.31 protein.
Length = 1048
Score = 31.1 bits (67), Expect = 0.86
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = -2
Query: 275 LKALEVAVDRLRVARDIVTRARSPGSSGAQ-SDLLCTICYARPA---DTAFVPCGHHSCR 108
L+A E ++ L + V + + + +L+C IC A D + CGH CR
Sbjct: 769 LEAYEKLIELLETLSNEVFKRETRNREAEEIPNLVCPICTAETGISNDFYRLECGHVMCR 828
Query: 107 ACVMQHLLN--SKQCFFCKAEID 45
C+ + + +Q F + EID
Sbjct: 829 TCINTQIRSRIDEQQFNIRCEID 851
>AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.11 protein.
Length = 487
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -2
Query: 245 LRVARDIVTRARSPGSSGAQSDLLCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCF 66
L V + + A+S S + ++C Y + + CGH CV LL+ ++C
Sbjct: 296 LAVFGSLTSVAQSSSHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCVDPWLLSKRRCP 355
Query: 65 FCKAEI 48
C+ ++
Sbjct: 356 LCQFDV 361
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 194 GAQSDLLCTICYARPADTAFVPCGHHSCRAC 102
G +D C IC D + C HH CR C
Sbjct: 11 GLPADCTCPICEQALRDPIKLNCDHHYCRQC 41
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 194 GAQSDLLCTICYARPADTAFVPCGHHSCRAC 102
G +D C IC D + C HH CR C
Sbjct: 11 GLPADCTCPICEQALRDPIKLNCDHHYCRQC 41
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -2
Query: 173 CTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEI 48
C +C+ + C H C+ C+ L C C+AE+
Sbjct: 337 CAVCHGDLLQPIKLECTHVFCKFCIETWLDQKSTCPICRAEV 378
>AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical
protein C45G7.4 protein.
Length = 603
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Frame = -2
Query: 134 VPCGHHSCRACVMQ-------HLLNSKQCFFCKAEIDT 42
+PCGH+ C +C+ +LL+S +C C+ E T
Sbjct: 41 LPCGHNFCESCIFSLCLHQEYYLLDSIKCPTCRREFTT 78
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = -2
Query: 311 FYRYP----EDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPAD 144
FY YP +D+ S L + A DR++V + G++ LC IC +
Sbjct: 345 FYIYPNGRDQDINLSKLMDVPQA-DRVQVTSEQYELYCEMGTTFE----LCKICDDNEKN 399
Query: 143 TAFVPCGHHSCRACVMQHLLN---SKQCFFCKAEI 48
PCGH C C+ + C FC+ EI
Sbjct: 400 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYEI 434
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = -2
Query: 311 FYRYP----EDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPAD 144
FY YP +D+ S L + A DR++V + G++ LC IC +
Sbjct: 345 FYIYPNGRDQDINLSKLMDVPQA-DRVQVTSEQYELYCEMGTTFE----LCKICDDNEKN 399
Query: 143 TAFVPCGHHSCRACVMQHLLN---SKQCFFCKAEI 48
PCGH C C+ + C FC+ EI
Sbjct: 400 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYEI 434
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = -2
Query: 311 FYRYP----EDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPAD 144
FY YP +D+ S L + A DR++V + G++ LC IC +
Sbjct: 328 FYIYPNGRDQDINLSKLMDVPQA-DRVQVTSEQYELYCEMGTTFE----LCKICDDNEKN 382
Query: 143 TAFVPCGHHSCRACVMQHLLN---SKQCFFCKAEI 48
PCGH C C+ + C FC+ EI
Sbjct: 383 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYEI 417
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = -2
Query: 311 FYRYP----EDVAASDLKALEVAVDRLRVARDIVTRARSPGSSGAQSDLLCTICYARPAD 144
FY YP +D+ S L + A DR++V + G++ LC IC +
Sbjct: 328 FYIYPNGRDQDINLSKLMDVPQA-DRVQVTSEQYELYCEMGTTFE----LCKICDDNEKN 382
Query: 143 TAFVPCGHHSCRACVMQHLLN---SKQCFFCKAEI 48
PCGH C C+ + C FC+ EI
Sbjct: 383 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYEI 417
>AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical
protein H10E21.5 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 227 IVTRARSPG-SSGAQSDLLCTIC---YARPADTAFVPCGHHSCRACVMQHLLNSKQCFFC 60
I T +PG + QSD C +C Y +PC H ++C+ LL + C C
Sbjct: 210 IPTMTITPGMTQELQSD--CAVCLDPYQLQDVIRLLPCKHIYHKSCIDPWLLEHRTCPMC 267
Query: 59 KAEI 48
K +I
Sbjct: 268 KNDI 271
>AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical
protein T08D2.4 protein.
Length = 95
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 173 CTICYARPADTAFVP----CGHHSCRACVMQHLLNSKQCFF 63
C+IC + +P CGH C C+ +HL +S F+
Sbjct: 26 CSICMEEFDANSHIPKVLICGHSFCIICIEKHLRSSNLTFW 66
>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 203 GSSGAQSDLLCTICYARPADTAFVP----CGHHSCRACVMQHLLNSKQC 69
G G ++LC R + F+P CGH CR C + +K C
Sbjct: 5 GQGGQWQEVLCCSICNRHFNETFLPVSLICGHVICRKCAEKPENQTKPC 53
>Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical
protein C06B8.3 protein.
Length = 342
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 312 GEALVLGFSQHEV*TVNAEQRFHY-QRFRHFI 404
G +LV+G H++ + + Q+FHY FR I
Sbjct: 140 GSSLVMGMQAHDINSSESRQKFHYNSNFRKSI 171
>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 203 GSSGAQSDLLCTICYARPADTAFVP----CGHHSCRACVMQHLLNSKQC 69
G G ++LC R + F+P CGH CR C + +K C
Sbjct: 5 GQGGQWQEVLCCSICNRHFNETFLPVSLICGHVICRKCAEKPENQTKPC 53
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -2
Query: 185 SDLLCTICYARPADTAFVPCGHHS-CRACVMQHLLNSKQCFFCKA 54
S L C IC + DT +PC H C C C C++
Sbjct: 265 SGLECIICLSDIRDTVILPCRHLCVCSNCADSLRYKHNNCPICRS 309
>Z35595-4|CAA84635.1| 170|Caenorhabditis elegans Hypothetical
protein C01G6.4 protein.
Length = 170
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 176 LCTICYARPADTAFVPCGHHSCRACVMQHLLNSKQCFFCKAEIDT 42
+C I + F+PC H + CV + L+ S C C +D+
Sbjct: 97 ICMIDFEPGERIRFLPCMHSFHQECVDEWLMKSFTCPSCLEPVDS 141
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -2
Query: 179 LLCTICYARPADTAFVPCGHHSCRACV---MQHLLNSKQCFFCKAE 51
L C IC R +PC H C C+ L + +C C+AE
Sbjct: 41 LTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAE 86
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -2
Query: 179 LLCTICYARPADTAFVPCGHHSCRACV---MQHLLNSKQCFFCKAE 51
L C IC R +PC H C C+ L + +C C+AE
Sbjct: 41 LTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAE 86
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 110 RACVMQHLLNSKQCFFCKAEIDTVQEIEP 24
R C++ HL +CF+C + + + EP
Sbjct: 65 RFCIVSHLEEQTKCFYCDSRTEWKPQREP 93
>AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical
protein K09F6.7 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 128 CGHHSCRACVMQHLLNSK-QCFFCKAEID 45
C H C C+ + L NSK C FC+ D
Sbjct: 27 CSHTLCEGCIKKMLGNSKIVCPFCREPTD 55
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = -2
Query: 128 CGHHSCRACVMQHLLNSKQ--CFFCKAEIDTVQE 33
CGH SC ACV K+ C C+ + E
Sbjct: 168 CGHTSCEACVESDFTQKKRVVCLTCEGRSGGITE 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,910
Number of Sequences: 27780
Number of extensions: 356251
Number of successful extensions: 1247
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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