Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14h02
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 438 ATRAEITTGALR*SDESADNGTVVPH 361
           ATRAEI T +++      D   V PH
Sbjct: 134 ATRAEIKTESIQPETTKVDTREVQPH 159


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 180 LALHHMLRETRRHSLRAVRTSF 115
           LA++H LR  R    RA+R+ F
Sbjct: 134 LAIYHPLRHYRSGLKRAIRSIF 155


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 204 GLQWGAVRLALHHMLRETRRHSLRAVRTSFLQSLRN 97
           GLQ  A++   + + R       R+V + F  SLRN
Sbjct: 15  GLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRN 50


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 194 GAQSDLLCTICYARPADTAFVPCGHHSCRAC 102
           G Q+D+    C   P        G HSC AC
Sbjct: 252 GYQADVEKQECTECPIGKFKHEAGSHSCEAC 282


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 404  DKVTKALIMEPLFRIDGLDFMLGKTKDKSFSFYRYP 297
            D   + L++  +F  D    ML KT+ ++F    YP
Sbjct: 1425 DTADEDLLINNVFYEDETSCMLDKTRAQTFDGKDYP 1460


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 444 ETSRNGSQGYVIMDPVGVRETARYKTREAGPPASTNTHSRHHGHQN 581
           E   + ++G  I +P      +  K   AG PA+ N  +  + +QN
Sbjct: 599 EHRSSSTKGITIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQN 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,933
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)