Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g24
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    24   5.4  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    24   7.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   7.1  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 69  KLNSRKLCLITSNSFRILQI 128
           ++N   +CL+T NSF +L I
Sbjct: 156 RVNGHIVCLVTENSFELLDI 175


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 134 LVIIRSYLRNCLPLP*RIPSSSINRLYVYVI 226
           L I+ S L N +P+P  + S S+N  +VY I
Sbjct: 424 LAILESVLDNSVPVPVDVASVSLNH-FVYCI 453


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 198 ELEGIL*GSGKQFRRYDLII 139
           E++G+  G G+QF R DL++
Sbjct: 102 EIDGLPTGCGRQFSRRDLLL 121


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 182 RIPSSSINRLYVYVII 229
           +IPSSSINR +V  I+
Sbjct: 277 QIPSSSINRFFVQGIV 292


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 128 NLKNTKRIRSN*TQLSAV*LPKLKFNECPSKYVLILLIKPNK 3
           +L   K I  +  +LS++ L K +  EC  +YV  LL K NK
Sbjct: 819 HLLGIKEILFSVLELSSL-LWKARTEECTDQYVPQLLYKSNK 859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,224,635
Number of Sequences: 5004
Number of extensions: 20045
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)