Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g24
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.99 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   7.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 333 LQSNTSPRLPRKINNEN*RIK*SEHWN 253
           L SN +P+ PR I+  N     ++ WN
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWN 385


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 LFYSLVFIIYFSRESW 315
           LFY+  FIIY S  S+
Sbjct: 337 LFYNTDFIIYSSLSSF 352


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 253 IPMFRLFYSLVFII 294
           +P+F + YS  FII
Sbjct: 227 VPLFLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 253 IPMFRLFYSLVFII 294
           +P+F + YS  FII
Sbjct: 103 VPLFLIIYSYWFII 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,001
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)