Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g22
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   3.0  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.0  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.0  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.2  

>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -1

Query: 380 FIPIGISLLIEQFRRKMICLSLYALIASATLLACVPVCYKRFEMQKFLQCIKK*VNDVD 204
           F+P+  S +      K+   + YA +  A      PV  K F  Q  +QC+     DV+
Sbjct: 64  FVPVRDSAVASISTSKVQDFNSYATLTEAQKKTATPVEEKNFLNQIVIQCLDSLETDVE 122


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 16  INFTCYVVKII*HPIALDS 72
           I+F+CY+V  + HP AL S
Sbjct: 139 ISFSCYIVLKMVHPYALPS 157


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 271 TGTQASKVADAIRAYRERQIIFRRNCSISSEIPI 372
           TGT     ++A+   RER++++  N  +S   P+
Sbjct: 890 TGTSEDDFSEAMTFIRERELLYGENSLLSRFAPL 923


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 152 PARDTARRHERRETGHANQHRLP 220
           P+ D  R  +R    HA+ HR+P
Sbjct: 106 PSLDGRRLSKRNAANHASHHRMP 128


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 422 RELYRLVWNIFDFRFIPIGISLLI 351
           R L   +WN  D R +PI +S LI
Sbjct: 3   RALLFYLWNQRDLRILPIVVSFLI 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,323
Number of Sequences: 5004
Number of extensions: 39756
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)