Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g21
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   0.34 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   0.78 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   1.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   1.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   3.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   3.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   3.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   3.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   7.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 0.34
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = -2

Query: 249 TGNFIITYKKIFIYNMAIIKWLSFNCMLLML 157
           TG ++ TY  +   ++ ++ W+ F  ++  L
Sbjct: 43  TGRYMFTYLHLLYQDVHVMIWIGFGFLMTFL 73


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 0.78
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  YKSSTGEHSLSH*HIKIRTCRNTLVDYAVSRLIISL 120
           YK+    H  SH H++    R TL    VS L++SL
Sbjct: 115 YKNQNNNHYTSHQHLRTH-LRGTLT-VNVSVLLLSL 148


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 252 ITGNFIITYKKIFIYNMAI-IKWLSFNCM 169
           +  N II    I  +N  +  +W++FNC+
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 252 ITGNFIITYKKIFIYNMAI-IKWLSFNCM 169
           +  N II    I  +N  +  +W++FNC+
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 252 ITGNFIITYKKIFIYNMAI-IKWLSFNCM 169
           +  N II    I  +N  +  +W++FNC+
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 YFLITLKAYN*TIAILLLPY 206
           YF+++L   +  +A+L++P+
Sbjct: 223 YFIVSLAVADLLVAVLVMPF 242


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 231 TYKKIFIYNMAIIKWLSFNCM 169
           T   +F+ N+AI  +L   CM
Sbjct: 85  TPSNLFVINLAISNFLMMFCM 105


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 YFLITLKAYN*TIAILLLPY 206
           +F+++L   +  +AIL++P+
Sbjct: 73  FFIVSLAVADLAVAILVMPF 92


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 YFLITLKAYN*TIAILLLPY 206
           +F+++L   +  +AIL++P+
Sbjct: 73  FFIVSLAVADLAVAILVMPF 92


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 YFLITLKAYN*TIAILLLPY 206
           +F+++L   +  +AIL++P+
Sbjct: 73  FFIVSLAVADLAVAILVMPF 92


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 231 TYKKIFIYNMAIIKWLSFNCM 169
           T   +F+ N+AI  +L   CM
Sbjct: 51  TPSNLFVINLAISDFLMMFCM 71


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 178 KR*PFYYCHIINKNLFIS 231
           KR P Y C +++  ++++
Sbjct: 78  KRIPLYVCRVLHTTVWVA 95


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 201 AIIKWLSF 178
           AII+WLSF
Sbjct: 406 AIIEWLSF 413


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 64  RTCRNTLVDYAVSRLIISL 120
           R C   LV  AVS L ++L
Sbjct: 74  RPCNYLLVSLAVSDLCVAL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,476
Number of Sequences: 438
Number of extensions: 1394
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)