Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g17
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.76
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.8
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 28 1.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 1.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.1
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.1
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 27 4.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.4
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 26 5.4
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.4
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 7.1
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 7.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 7.1
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 557 NTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFETQTIYKNSYLPATATIPT 396
N YT S + S + T+ S P++AS + +I NS +P T+ +PT
Sbjct: 71 NYPYTGSKSLSSSSILSNSTISTSSSTPITASVP-TSSSILSNSTIPTTSPVPT 123
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Frame = -1
Query: 578 PCQKLDGNTTYTMSYLDAKSDCRRQPILPTACSN---PVSASKRFETQTIYKNSYLPATA 408
P + +Y+ +Y + P LPTA +N PV +R + Y + +PA
Sbjct: 153 PPPSYSSSGSYSQTYQSNANYTASSP-LPTASANAPLPVPPPRRVSQNSSYASGSVPAAT 211
Query: 407 TI---------PTPVKPSPNIIASTAQMEGDTVQKLSYLPNPV 306
P P P P +A+ V + +P PV
Sbjct: 212 AASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPV 254
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 152 PFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAVLLTS 33
P R + S L+P LP S APV Y + ++ LL++
Sbjct: 255 PANTRASHSPSLLEPYAHSLPSSVAPVGAYPEKSSYLLSN 294
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -1
Query: 275 HDMWGQGPMQNITTQRHDYVPKPSV----LRESFKPAHKY 168
HD+W + ++ DY P P + ES+ P +Y
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -2
Query: 619 KKQXRGLVRDNMRSLVKSWTEIRHTQ*VTWTRKATVVDNPSYRLLAPTLSPLRR 458
+K +GL +DN++SL + W +R+ + AT +NP + ++ L ++R
Sbjct: 8 QKFPKGLTKDNIQSLYQQWQVMRN-------QGATEENNPEFAQISSILRMVQR 54
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 337 CKSCRTYRTRCA*RSRSGPATTTCGVRVPC 248
C +CR ++RC S P +++PC
Sbjct: 25 CDNCRLRKSRCVVESIGNPCLLCTQLKIPC 54
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 575 KASHIVPYKPTXLFLSSLLSN 637
+AS ++PYKP+ LF SL+SN
Sbjct: 14 RASRLMPYKPSFLF--SLISN 32
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 577 LVKSWTEIRHTQ*VTWTRKATVVDNPSYRLLAPTLSPLRRDLKR 446
L S +++R+T + R V+ NP + L PTL D R
Sbjct: 1531 LTDSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTR 1574
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 590 QYEKPCQKLDGNTTYTMS-YLDAKS 519
QY+K ++LD TTY MS YL ++
Sbjct: 54 QYKKEIEQLDSKTTYLMSLYLSPET 78
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 500 WVVDDSRFSRPSNSLCMSYFRPTFDKASHIVP 595
W VD S + NS+ + +PTF K +VP
Sbjct: 177 WSVDWSALTFKRNSVTKADVKPTFGKVIDVVP 208
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -1
Query: 557 NTTYTMSYLDAKSDCRRQ--PILPT-ACSNPVSASKRFETQTIYKNSYLPATATIPTPVK 387
N YT+ +D + P PT A P S SKR E K++Y +
Sbjct: 279 NNDYTVGKVDTLKVTKEDEDPTTPTNAIPIPSSMSKRDEALENDKDNYFDDLHPLNISTS 338
Query: 386 PSPNIIASTAQMEGDTVQKL-SYLPN 312
P P+ ++ + + DT L ++L N
Sbjct: 339 PQPSPLSFSEIPQSDTRNALENFLDN 364
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -1
Query: 212 KPSVLRESFK---PAHKYHCVEQPFENR 138
KPS+L S PAH +CV FE R
Sbjct: 342 KPSILHSSLSSLLPAHPIYCVPFGFEER 369
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 221 YVPKPSVLRESFKPAHKYHCVEQPFENRTVNRMSFLDPGRVPLPESYAPVK 69
Y P V +F P H + + + VNR +FL P P + P +
Sbjct: 142 YYPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFLPREGTPPPFAQQPAE 192
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 536 NSLCMSYFRPTFDK 577
N LC+S+FR FDK
Sbjct: 12 NKLCVSFFRSKFDK 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,746
Number of Sequences: 5004
Number of extensions: 74102
Number of successful extensions: 270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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