Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g17
(791 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 27 0.15
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 1.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.5
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 23 4.3
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 4.3
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 7.5
U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein. 21 9.9
AF442147-1|AAL35348.1| 33|Apis mellifera abaecin precursor pro... 21 9.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.9
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 27.5 bits (58), Expect = 0.15
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = -1
Query: 500 ILPTACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNIIASTAQMEGDTVQKLSY 321
+L C N V KR +Y+ P T +P + I+AS + EG +
Sbjct: 347 LLEFVCVNYVGR-KRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATT 405
Query: 320 LPNPV--CVTQSIRPCHH 273
PN + C PC H
Sbjct: 406 GPNEIVTCTNCGPNPCTH 423
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 1.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RAGSTASRTPGSVGTTTFAPCPLP 352
+AGST + TP +V TTT A LP
Sbjct: 207 KAGSTDASTPATV-TTTGATTTLP 229
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 243 HHHATTRLRAQAVCTPGVVQTGSQ 172
HHH +T +AQA P Q Q
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQ 838
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.4 bits (48), Expect = 2.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 247 RTSPRNDTTTCPSRLYSGSRSNRLTSTTASNNRLKIG 137
+TS ND T S + +T+T NN+ +IG
Sbjct: 993 QTSANNDKDTNAVVTQSKEARDNITATKQLNNKARIG 1029
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 22.6 bits (46), Expect = 4.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 582 EALSKVGRKYDIHNELLGREKR 517
++L + RK+ +H E L RE+R
Sbjct: 98 KSLEERERKHAVHKEQLSREQR 119
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 419 PATATIPTPVKPSPNII 369
P ++PTPV P+P +
Sbjct: 151 PRGGSLPTPVTPTPTTV 167
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.8 bits (44), Expect = 7.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 449 TQTIYKNSYLPATATIPTPVKPSPNIIAST 360
T + N +LP IP P + +IAS+
Sbjct: 572 TYCAFWNEFLPKLKGIPDPXPNTCKVIASS 601
>U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein.
Length = 53
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 709 YVPKPSIXRESFKPAPKFXXGRP 641
YVP P++ + +P P F P
Sbjct: 20 YVPLPNVPQPGRRPFPTFPGQGP 42
>AF442147-1|AAL35348.1| 33|Apis mellifera abaecin precursor
protein.
Length = 33
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 709 YVPKPSIXRESFKPAPKFXXGRP 641
YVP P++ + +P P F P
Sbjct: 6 YVPLPNVPQPGRRPFPTFPGQGP 28
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 9.9
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +1
Query: 28 IQLVSNTAVGFS*HLTGAYDSGRGTRPGSKNDIRFTVRFSNGCSTQW 168
IQ+++ T VG T Y PGS DI+ V W
Sbjct: 1188 IQVLAFTRVGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISW 1234
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 9.9
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +1
Query: 28 IQLVSNTAVGFS*HLTGAYDSGRGTRPGSKNDIRFTVRFSNGCSTQW 168
IQ+++ T VG T Y PGS DI+ V W
Sbjct: 1184 IQVLAFTRVGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISW 1230
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,540
Number of Sequences: 438
Number of extensions: 5490
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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