Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g16
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 28 1.00
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 28 1.00
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 28 1.00
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.00
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.00
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 2.3
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 3.0
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 4.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 5.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.0
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.0
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 7.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 9.3
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 9.3
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 25 9.3
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 1.00
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 281 KVSNKTNKNITQHESVSNANRRAIA 207
++S TN NIT ES SN+N + I+
Sbjct: 288 EISQNTNANITVEESDSNSNEKFIS 312
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 1.00
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 185 FNDRDDINEPNIEFGKNEIIGSVINDNIPGFIEASAAKAD 66
F+D NE N E N + NIP ++ AS + D
Sbjct: 31 FSDNRKFNERNSEASSNVGFQRRVRSNIPSYLSASVEEGD 70
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 281 KVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRD 171
K S + N TQ ++ +N N + E+E N P+ DRD
Sbjct: 107 KKSRSKSANGTQKKNANN-NEEQLDEEEQNDPYLDRD 142
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.00
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 338 TNVYESTENFHFNGDEPTEKVSNKTNKN 255
+ +Y + +F + D T VSN TNK+
Sbjct: 334 SQMYSAASHFRYRSDPSTRHVSNSTNKS 361
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.00
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 402 YVHSEGVSVR*IARETSRVGEYKCLRI 322
Y+HS+G++ R I E + EY LRI
Sbjct: 574 YIHSQGIAHRDIKPENILISEYGVLRI 600
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -3
Query: 362 ERQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPF 183
+ +A + TN +S+ N + P + NK V N N EDE NV
Sbjct: 46 DSEAAKITTNEKQSSPVDSHN-ESPNDTTINKGEDG--NENEVDNVNNNDKKEDEDNVEE 102
Query: 182 NDRD-DINEPNIE 147
N+ + D NE E
Sbjct: 103 NEEEADANEEEEE 115
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 422 IMLAEAFMYIQR--VFQFGRSRERQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNIT 249
I L E M I R +F+ + R+A+ + + +F+ NG + + SN +N T
Sbjct: 937 IGLTEQQMRIDRWNIFEERANLLRKAKDPSPKSASESSSFYQNGSDIDDNDSNSSN---T 993
Query: 248 QHESVSNANRRAIAEDESNVPFND 177
+ + NAN + ++ N F D
Sbjct: 994 SNHTTENANAQQRKLEDLNRSFED 1017
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 293 EPTEKVSNKTNKNITQHESVSNANRRAIAE 204
EP EKV+ I HES+ N +AE
Sbjct: 14 EPFEKVNENYKHEIDYHESILNKKTAVLAE 43
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 380 QFGRSRERQAELVNTNVYESTENFHFNG--DEPTEKVSNKTNKNITQHESVSNANRRAIA 207
+FGR +ER +++ +YES H + +E E++S T K + E N +
Sbjct: 4 RFGRRKERNGDML--PLYESQSPQHLDSLENENDERISKLTGKVKSLKELTMNIGTEITS 61
Query: 206 EDESNVPFNDRDD 168
+ ND D
Sbjct: 62 STKLMESMNDSFD 74
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 167 INEPNIEFGKNEIIGSVINDNIPGFIEASA 78
I EP++ EI ++++N+P FI++ A
Sbjct: 234 IFEPSLSERITEITDQILSENVPSFIDSMA 263
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 244 CCVMFLLVLLETFSVGSSPLKWKF 315
C V+F +V L ++ SSP KW +
Sbjct: 133 CYVLFAIVCLLAAALTSSPYKWAY 156
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -3
Query: 344 VNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 216
+N+N + EN HF D+ + N +N+ + + + + R
Sbjct: 110 INSNSNKGKENMHFVLDDNGDSKGNASNQQVERDDKLDMETTR 152
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.0
Identities = 19/95 (20%), Positives = 41/95 (43%)
Frame = -3
Query: 332 VYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPN 153
+YES + ++++ KT + + +S + + + S +PF + E
Sbjct: 6 LYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGK--VVQLRSFIPFKNAAHALE-- 61
Query: 152 IEFGKNEIIGSVINDNIPGFIEASAAKADEESNAA 48
N+I V+ND + F+E + KA ++ +
Sbjct: 62 ---NANDISEGVLNDFLKNFLELNLPKASKKKKVS 93
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 359 RQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSN 228
RQ+ +VN N + +H PTE N T + ++ESV N
Sbjct: 279 RQSSVVNNNSVQQPVAYHAFVQSPTE---NGTLPQLPKNESVVN 319
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 295 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 179
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -3
Query: 284 EKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEI--IGSVIN 111
EK + Q E + N+ ++ +E + F D +IN+ NI + E+ + +
Sbjct: 255 EKEKRSDHLKSIQSEVSNLWNKLQVSPNEQS-QFGDSSNINQENISLWETELEKLHQLKK 313
Query: 110 DNIPGFIE 87
+++P F+E
Sbjct: 314 EHLPIFLE 321
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = -3
Query: 269 KTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVINDNI 102
K N++Q ++++ N D SN P+ND + N+++ S I++++
Sbjct: 478 KATPNLSQSGNINSDN-----SDLSNYPYNDYRVYRMSHCSSNSNKVLASEISESL 528
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 260 KNITQHESVSNANRRAIAEDESNVPFNDRDDINE 159
K I HE +++A+ +EDE +V ++ NE
Sbjct: 310 KTIELHEKIASASDIGASEDEEDVDMHESISDNE 343
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +3
Query: 417 HNQTDVETVRYXIGYSSVGLARWTACSV 500
HNQT + Y +G RWT +
Sbjct: 229 HNQTYTNLINYLLGSGGTYYHRWTESDI 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,809
Number of Sequences: 5004
Number of extensions: 42094
Number of successful extensions: 179
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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