Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g16
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0796 + 27787401-27788831 32 0.33
02_02_0360 + 9400082-9400524,9406729-9406936 31 0.44
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 31 0.76
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 1.8
02_05_0262 + 27247449-27247808 29 2.3
01_03_0272 - 14463976-14464329 29 2.3
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 28 5.4
01_07_0077 - 40916077-40916412 28 5.4
06_02_0013 - 10581449-10585105 27 7.1
12_02_0427 + 18973358-18973364,18974195-18974300,18974763-189748... 27 9.4
>03_05_0796 + 27787401-27788831
Length = 476
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 113 NDNIPGFIEASAAKADEESNAADAGCHKCLEKGKVCM 3
ND I G + AS+ D + HKC E GKVC+
Sbjct: 380 NDKIAGVVVASSHDGDSDVGKMKIVQHKCDECGKVCL 416
>02_02_0360 + 9400082-9400524,9406729-9406936
Length = 216
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 326 ESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPN 153
ES E+ NGD+ E ++ T + ++ E VSN + +D + + DD PN
Sbjct: 153 ESEEDDDDNGDDEEEVSNDDTTEEVSDEEEVSNDDTTEEEDDLEDDDKSSSDDDEAPN 210
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 30.7 bits (66), Expect = 0.76
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -3
Query: 296 DEPTEKVSNKTNKNITQHES-VSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGS 120
D P +K N+ ++ + + V AN A + + V + +D+I+E G EII S
Sbjct: 387 DNPDDKNRNEDDRLVPFASTWVQQANEGARTSEIATVEY--KDEISED----GGKEIISS 440
Query: 119 VINDNIPGFIEASAAKADEESNAADAG 39
+ IEA+AA +++ESN AG
Sbjct: 441 NTSSEQTS-IEANAAASEDESNEGIAG 466
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = -3
Query: 275 SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVINDNIPG 96
+ K K+ E +SNA ++ + +S + ND++ N+P+ G + IG+ +N
Sbjct: 1226 TTKLEKSSKGSEVLSNAKEGSLKQSQSPLHANDKEP-NQPDQSNGNSSRIGAGLNG---- 1280
Query: 95 FIEASAAKADEESNAAD 45
+E + AK + SN+AD
Sbjct: 1281 -MEDAIAKIN-HSNSAD 1295
>02_05_0262 + 27247449-27247808
Length = 119
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 524 PCRVLASVYRTCRPAGQA--YRRIADXISDC 438
PC V + Y CRP GQA Y R I+ C
Sbjct: 87 PCSVRGASYYNCRPGGQANPYSRGCSAITRC 117
>01_03_0272 - 14463976-14464329
Length = 117
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 524 PCRVLASVYRTCRPAGQA--YRRIADXISDC 438
PC V + Y CRP GQA Y R I+ C
Sbjct: 85 PCSVRGASYYNCRPGGQANPYSRGCSAITRC 115
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 275 SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIE 147
S+K Q ++A + EDE ++ F + + I+ P+IE
Sbjct: 289 SSKARSGAPQRAMAASATSKEEKEDEPSMQFEESESISTPSIE 331
>01_07_0077 - 40916077-40916412
Length = 111
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 524 PCRVLASVYRTCRPAGQA--YRRIADXISDC 438
PC + Y CRP GQA Y R I+ C
Sbjct: 79 PCSYRGASYYNCRPGGQANPYTRGCSAITQC 109
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 356 QAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNV-PFN 180
Q + ++ + E N P+EK + TN H+S N E+ S++ F
Sbjct: 499 QGQSIDDQAQPTAEESISNTQHPSEKSQHATNYKDGMHQSADNQQDANTKENSSSIDDFK 558
Query: 179 D-RDDINEP 156
+D I++P
Sbjct: 559 TLKDGISDP 567
>12_02_0427 +
18973358-18973364,18974195-18974300,18974763-18974855,
18974978-18975173,18975362-18975540,18975882-18976135,
18976378-18976538,18976633-18976800
Length = 387
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 159 FINIIPVIEWYV*FVLRNSPSISVRYGLVLCDVLVSFI 272
F++ P I W +L SPS S R+G ++C +++I
Sbjct: 337 FLSASPPIYWAASHILV-SPSSSKRWGNIICAYFIAYI 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,791
Number of Sequences: 37544
Number of extensions: 250487
Number of successful extensions: 696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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