Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g14
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.14
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 0.73
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.97
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.3
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 3.9
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.9
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 3.9
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 5.2
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 5.2
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.2
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 5.2
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 5.2
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.8
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 26 6.8
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 6.8
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.8
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 6.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 6.8
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 6.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.0
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 9.0
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 25 9.0
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 9.0
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 268 TLELSFENRTDTSDVQESSNVEIE-TCGVEKIEKLTKYLQATGAGEREWKNFDGNVI 101
T++ + +T +SD+ E ++EI C E EKLT LQ+ +RE + N I
Sbjct: 138 TVDEDIDTQTMSSDMSEVQSMEISLNCDHEFFEKLTSELQSVEGLQREQRKILFNAI 194
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 703 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTV--PSSN--IHICYGQVFCEPC 551
C +C + + +++ + +HS C KC C+ PSS Q+FC+ C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.97
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 487 EQFADPRFAENMKQFMAGKDGAP 419
E DP F EN KQ++ K G+P
Sbjct: 266 EYLNDPDFEENRKQYLQNKSGSP 288
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 565 FCEPCFQHHVLHRHKDNPN 509
FC PC + LH HKDNPN
Sbjct: 17 FCGPCRR---LHYHKDNPN 32
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 217 SSNVEIETCGVEKIEKLTKYLQATGAGEREWKNFDG--NVISESLNGWIDLQKGKTSDCL 44
+S++EIET + K+ + A G E +NFDG + ++ S G + Q + D +
Sbjct: 236 ASSMEIETPDLLKLPHEDRTQSAYNQGSEETQNFDGPPSAVTFSSIGGLQAQIAQIRDIV 295
Query: 43 SCLWQTGCVF 14
+Q +F
Sbjct: 296 ELPFQNPELF 305
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 681 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 511
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 288 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 681 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 511
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 594 PTSTSAMVKSSASLASNITSCTDIRTTPMXXXXXXXXXSRTPDLP 460
PTSTS+ +S L + TSCT + P TP +P
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 594 PTSTSAMVKSSASLASNITSCTDIRTTP 511
PTSTS+ +S+ L + TSCT + P
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 594 PTSTSAMVKSSASLASNITSCTDIRTTP 511
PTSTS+ +S+ L + TSCT + P
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 24 PVCHKQLKQSDVFP----FCKSIQPFKDSEMTFP 113
P + LK+S F F +SIQ FKDSE P
Sbjct: 166 PAINPNLKESSKFESFFGFVRSIQSFKDSETGLP 199
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 265 LELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYL 155
LEL F + + + ++ N+E++T KIE++ YL
Sbjct: 31 LELLFRKQCEDTFTLQAINIEVDTQDENKIEEVRIYL 67
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 237 SVRFSKDSSKVESSVLQSMVVVAVKMFNSYAHFFGSLLPNHSCGP 371
S+ SK ++K S V++ + A + N Y SLL HS P
Sbjct: 47 SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQP 91
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +3
Query: 120 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLD 218
FF AP+ +F+ + I+ H+ + LD
Sbjct: 518 FFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKLD 550
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 120 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSWT 227
FF APV +F+ + I+ H+ LD T
Sbjct: 514 FFQGYLAAPVTLAFFIGYKIYDRSHIPSLDKLDITT 549
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = -1
Query: 349 NSEPKKCA*EL--NIFTATTTIDCRTDDSTLELSFENRTDTS--------DVQESSNVEI 200
+SE ++ A L + F + + I ++ +E+ E+++DTS DVQ +
Sbjct: 1296 DSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKDDVQSEEVENL 1355
Query: 199 ETCGVEKIEKLTKYLQATGAGEREWKNFDGNVISESL 89
E+ G E E+ LQA G +W DG+ + + L
Sbjct: 1356 ESAGDEDEEEEPSALQANGF---DWT--DGSTVFDKL 1387
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 99 EMTFPSKFFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSW 224
E++ H+ SP P YF+S + VS+ LL W
Sbjct: 167 ELSPKEVILHTFSPPPKRANYFLSICFSVSVVVSLIGLLGVW 208
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 319 LNIFTATTTIDCRTDDSTLELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYLQATGA 140
L++ TAT+ + TD +++ EN SD+Q T +E+ L + G
Sbjct: 359 LDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNK-----RTKSIEENNSLPPIVSTNGI 413
Query: 139 --GEREWKNFDGNVISESLN 86
G+ E + NVI N
Sbjct: 414 TDGDTEMQESKKNVIINGFN 433
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 146 GRLQVFRQFFNFFNSTRFNLYIARFLD 226
GRL+ R FFN S F+L + R LD
Sbjct: 321 GRLKPLRCFFNDDISYNFHLLLGRLLD 347
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 62 SLLQVNPAV*RFRNDIPVEILPF 130
S +QVNPA +R++ PVEI+ +
Sbjct: 268 SHMQVNPAFREYRSNRPVEIVQY 290
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 101 NDIPVEILPFPFARAGRLQVFRQFFNFFN 187
ND+P+ ++ F R+G+L QF N ++
Sbjct: 388 NDVPLWVVLFYLMRSGQLDAALQFVNTYS 416
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = -1
Query: 754 EQAANSEAXEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSS 593
+Q N A N +SV + + + ++ + K A A C F H P++
Sbjct: 151 KQRFNPMAASFNYSKSVMPAAKRALTQTQEVPLCKYADKCSRANCIFAHPTPAA 204
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 189 PHVSISTLLDSWTSDVSVRFSKDSSKVESSVLQSMV 296
PH +ISTL +D S SK +S ++ +++V
Sbjct: 183 PHSTISTLSTVSINDTSASLSKTTSPTAGTITETIV 218
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 726 KGILNAAXALDAFK*STRITKLKLTSRPSIVTVP-SAIFATRFHRPTSTSAMVKSSASLA 550
KG+ NAA + +F S I+K TSR S +P S + A + +KS
Sbjct: 621 KGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAASALKEYPQQQSMKSGGEKQ 680
Query: 549 SNITSCT 529
N+ + T
Sbjct: 681 DNLVTIT 687
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 151 ATGAGEREWKNFDGNVISESLNGWIDLQKGKTSDCLSCLWQTGCVF 14
A G+G W ++ + L GKT DC S L + +F
Sbjct: 102 AAGSGGSHWSLMVASIPDGQCYYYDSLSNGKTKDCRSALARVSDLF 147
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 163 KYLQATGAGEREWKNFDGNVISESLNGW 80
+Y G+ EW+ +DGN +L+GW
Sbjct: 881 RYSLDFGSTWTEWQTYDGNNTYCNLSGW 908
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 277 DDSTLELSFENRTDTSDVQESSNVEIET-CGVEKIEKLTK 161
DD+TLE+ EN D S E ++++ + ++E++ K
Sbjct: 154 DDNTLEIEVENPADVSKDAEIKKLKLQNQLLISQLEEIRK 193
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 427 GAPFVFMQGQQPPFCRCGTGPQ 362
G P F +G+ P F CG PQ
Sbjct: 251 GVPVEFKEGEIPIFWGCGVTPQ 272
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 84 PFKDSEMTFPSKFFH 128
P+++ ++TFPS FFH
Sbjct: 327 PYQNLKITFPSPFFH 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,200
Number of Sequences: 5004
Number of extensions: 73501
Number of successful extensions: 282
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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