Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g09
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    37   0.002
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    34   0.023
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    32   0.070
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.86 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   2.0  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   2.6  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 237  IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
            + C NCL W+H +C   SS+    + N  + CP C +K
Sbjct: 1470 VQCHNCLEWFHYECVGLSSDIVSTLSN--YACPDCCSK 1505



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 237  IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCN 130
            I C+ C  WYH KC   S +      +++F+CP C+
Sbjct: 1185 IECELCHEWYHAKCMKMSKKKLR--ADEKFICPICD 1218


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 237  IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCN 130
            I C+ C  WYH KC   S +      +++F CP C+
Sbjct: 1110 IECEICHEWYHAKCLKMSKKKLRQ--DEKFTCPICD 1143


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK*K 118
           +GCD C  W+H  C +   E Y N    ++ CP C  + K
Sbjct: 133 LGCDGCEDWFHGTC-VNIPESY-NDLTVQYFCPKCTEEGK 170


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 231 CDNCLAWYHLKCTIFSSEDYE-NVYNKE--FVCPTCNNK*K 118
           CD+C   YH  C+   S + E   Y+++  F+CP C+   K
Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLCSKNSK 273


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 237 IGCDNCLAWYHLKCTIFSSE-DYENVYNKEFVCP 139
           I CD C  W H  C  F+ E +   VY  E   P
Sbjct: 69  IQCDQCSVWQHGNCVGFADESEVPEVYYCEICHP 102


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
           + CD C  W H  C   + +D    Y     C  C+++
Sbjct: 36  VQCDGCDCWQHASCVGLADKDIPESY----YCEVCHSR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,750
Number of Sequences: 5004
Number of extensions: 41127
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)