Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g09
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627... 42 5e-04
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 42 6e-04
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 39 0.003
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 39 0.003
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 37 0.014
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 37 0.014
04_04_0015 + 22164889-22165000,22165135-22165167,22165992-221662... 37 0.018
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 36 0.024
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 35 0.055
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 34 0.096
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 34 0.13
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 33 0.22
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 33 0.29
12_02_0521 - 19955475-19956076,19957146-19958403 32 0.39
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 32 0.51
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 31 1.2
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 31 1.2
04_03_1046 + 21974577-21975126,21975620-21975894,21976120-219762... 30 1.6
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 30 2.1
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 2.1
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 30 2.1
03_02_0178 + 6195402-6199158,6199438-6200003 30 2.1
08_02_0704 + 20197529-20197601,20197720-20198062,20198194-201982... 29 2.7
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 28 6.3
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 28 8.3
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 28 8.3
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 28 8.3
>01_06_1602 -
38559661-38559936,38560008-38560137,38562550-38562778,
38563627-38563659,38563746-38563896
Length = 272
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
I CDNC WYH KC + E++ K++ CP C NK
Sbjct: 233 ICCDNCEKWYHGKCVKITPARAEHI--KQYKCPDCTNK 268
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
IGCD C WYH KC + E++ K++ CP+C++K
Sbjct: 219 IGCDVCERWYHGKCVKITPAKAESI--KQYKCPSCSSK 254
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Frame = -3
Query: 294 CDSCEEELTN--DTDINVLKNIGCDNCLAWYHLKC--------TIFSSEDYENVYNKEFV 145
C+ C + N D D+N + IGCD C W H C T+ + ED Y F
Sbjct: 190 CNLCMCVVCNGFDFDVNTCRWIGCDGCSHWTHAGCAIREEQIKTVITVEDGVAHYVTVFF 249
Query: 144 CPTCNNK*KADYWVRH 97
C C+ + WVR+
Sbjct: 250 CKACHGTSELLGWVRN 265
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
I CD+C WYH KC + E++ K + CP C NK
Sbjct: 197 ICCDSCERWYHGKCVKITPARAEHI--KHYKCPDCGNK 232
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK*KA 115
IGCD C W+H KC + E++ K + CP C++ K+
Sbjct: 204 IGCDICERWFHGKCVRITPAKAEHI--KHYKCPDCSSSKKS 242
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 231 CDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK*K 118
CD C W H++C + + + E++ N ++ CP C +K K
Sbjct: 397 CDECQIWVHVECDL-TCINMEDLENADYFCPDCKSKRK 433
>04_04_0015 +
22164889-22165000,22165135-22165167,22165992-22166220,
22166709-22166826,22166910-22167188
Length = 256
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
I CD C W+H KC + E++ K + CP C+NK
Sbjct: 217 ICCDICETWFHGKCVRITPAKAEHI--KHYKCPGCSNK 252
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNN 127
IGCD C W+H KC + E++ K + CP C++
Sbjct: 254 IGCDICERWFHGKCVRITPAKAEHI--KHYKCPDCSS 288
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 35.1 bits (77), Expect = 0.055
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
I CD C W+H KC + E++ K++ CP C++K
Sbjct: 171 ICCDVCEKWFHGKCVRITPAKAEHI--KQYKCPGCSSK 206
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 34.3 bits (75), Expect = 0.096
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 258 DINVLKNIGCDNCLAWYHLKCTIFSSEDYENV---YNKEFVCPTCNNK 124
D V+ + CD C W H++C S E Y+ N ++ C C +
Sbjct: 285 DSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGACRGE 332
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCN 130
I CD C W+H KC + E++ K++ CP+C+
Sbjct: 226 ICCDICEKWFHGKCVKITPAKAEHI--KQYKCPSCS 259
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 261 TDINVLKNIGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
TD + + + CD C W H +C S D++ V K +VC +C
Sbjct: 633 TDDDGERMLSCDTCHMWMHTRCAGIS--DFDRV-PKRYVCKSC 672
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -1
Query: 653 IGDCTLDNNFINLTESEVPLNDFKFITDFXVLQESHEVQETGASEFNTQEDINC 492
+ D +D +N+TE E PL+D + ++ + E +Q+ + ED++C
Sbjct: 376 LNDDYVDEMAVNMTEDESPLHDMENKSEMKGIDEEASLQDLPKETSSISEDLSC 429
>12_02_0521 - 19955475-19956076,19957146-19958403
Length = 619
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 294 CDSCEEELTN--DTDINVLKNIGCDNCLAWYHLKCTI 190
C+ C + N D ++N + IGCD C W H C I
Sbjct: 279 CNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAI 315
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
+ CD C W H C +F+ + E+ CP C
Sbjct: 998 VQCDKCECWQHQICALFNGRRNDG-GQAEYTCPNC 1031
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
+ CD C W H +C+ S D+++V K F+C C
Sbjct: 636 LACDVCGVWQHTRCSGIS--DFDDVPEK-FICRKC 667
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 264 DTDINVLKNIGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
+TD + CD C AW H C +F+ + + E+ C C
Sbjct: 595 ETDAEAEWWVQCDKCKAWQHQICALFNPKIVDP--EAEYTCAKC 636
>04_03_1046 +
21974577-21975126,21975620-21975894,21976120-21976284,
21976352-21976441,21977723-21978097
Length = 484
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 535 SWTS*LSCKTSKSVMNLKSFKGTSLSVKLMKLLSNVQSPIXGKLTWKN 678
S TS SC+ K++ LKSF G + + M L+ + G+ +WKN
Sbjct: 218 SATSRFSCEDEKTIETLKSFFGDKI-LDHMILVFTRGDEVGGETSWKN 264
>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3
Query: 294 CDSCEEELTNDTDINVLKNIGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK*K 118
CD C T ++V + + CD C YH C + D + V + C TC+ K K
Sbjct: 965 CDGC------GTKVDVEEGLICDECDTMYHFACVKLLNPDIKQV-PAIWHCSTCSFKKK 1016
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
+ CD C W H C +F++ +V E+ C C
Sbjct: 897 VQCDKCECWQHQICALFNAR-RNDVEEAEYTCFKC 930
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = -3
Query: 303 RIRCDSCEEELTNDTDINVLKNIGCDNCLAWYHLKCTIFSSEDYENV-YNKEFVCPTCNN 127
++RC C + ND+ I C W HL C + + E+ F C C
Sbjct: 114 KVRC-ICSSTMVNDSMIQCEDQ----RCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 168
Query: 126 K*KADYWVRHG 94
+WV G
Sbjct: 169 SRADPFWVTAG 179
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 294 CDSCEEELTNDTDI--NVLKNIGCDNCLAWYHLKC 196
C SC + ++ D+ N +GCD CL W H C
Sbjct: 1112 CSSCMCIVCSNFDMASNTCSWVGCDVCLHWCHTDC 1146
>08_02_0704 +
20197529-20197601,20197720-20198062,20198194-20198262,
20199341-20199479,20199727-20199786
Length = 227
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
+ CD+C W+H C + E + + FVC C
Sbjct: 154 VQCDDCKDWFHPSCMSMTIEQAKKL--DHFVCSDC 186
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 306 NRIRCDSCEEELTNDTDINVLKNIGCDNCLAWYHLKCTIFSSEDYENVYNK 154
NR+ C N +++L + CDN + +C+ S +D+E ++ K
Sbjct: 510 NRLLSSLCHSRKMN---VHLLGELMCDNPVTVQLSECSWLSEDDFETIFGK 557
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCT----IFSSEDYENVYNKEFVCPTCN 130
+ C C W H C + + +DY E++CP C+
Sbjct: 699 VNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCS 738
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCT----IFSSEDYENVYNKEFVCPTCN 130
+ C C W H C + + +DY E++CP C+
Sbjct: 691 VNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCS 730
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 255 INVLKNIGCDNCLAWYHLKCTIFSSEDYENVY--NKEFVCPTC 133
I++ I CD C HLKC D NV E+ CPTC
Sbjct: 312 IDIHSMIICDACERGIHLKCL---QHDGVNVLPPKAEWYCPTC 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,146
Number of Sequences: 37544
Number of extensions: 210853
Number of successful extensions: 496
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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