Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g09
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 40 0.001
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 40 0.001
Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical p... 33 0.15
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81515-7|CAB04195.1| 510|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81515-6|CAB04198.1| 405|Caenorhabditis elegans Hypothetical pr... 33 0.15
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 32 0.46
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical... 29 4.3
AF026211-3|AAK77634.2| 340|Caenorhabditis elegans Hypothetical ... 29 4.3
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 5.7
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 5.7
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
IGCD+C WYH C+ E +E ++F CP C
Sbjct: 242 IGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKC 274
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
IGCD+C WYH C+ E +E ++F CP C
Sbjct: 255 IGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKC 287
>Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical
protein F26H11.2g protein.
Length = 413
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
+GCD+C W+H +C + + E ++ CP C +
Sbjct: 194 VGCDSCQGWFHPECVGTTRAEAEQA--ADYNCPACTRE 229
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
+GCD+C W+H +C + + E ++ CP C +
Sbjct: 2047 VGCDSCQGWFHPECVGTTRAEAEQA--ADYNCPACTRE 2082
>Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical
protein F26H11.2d protein.
Length = 692
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
+GCD+C W+H +C + + E ++ CP C +
Sbjct: 473 VGCDSCQGWFHPECVGTTRAEAEQA--ADYNCPACTRE 508
>Z81515-7|CAB04195.1| 510|Caenorhabditis elegans Hypothetical
protein F26H11.2f protein.
Length = 510
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
+GCD+C W+H +C + + E ++ CP C +
Sbjct: 291 VGCDSCQGWFHPECVGTTRAEAEQA--ADYNCPACTRE 326
>Z81515-6|CAB04198.1| 405|Caenorhabditis elegans Hypothetical
protein F26H11.2e protein.
Length = 405
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTCNNK 124
+GCD+C W+H +C + + E ++ CP C +
Sbjct: 186 VGCDSCQGWFHPECVGTTRAEAEQA--ADYNCPACTRE 221
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 231 CDNCLAWYHLKCTIFSSEDYENVYNKEFVCPTC 133
C C W HLKCT S+ +N +F C C
Sbjct: 256 CTKCQKWVHLKCTGIRSKQ----WNSQFQCKNC 284
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 237 IGCDNCLAWYHLKCTIFSSE 178
IGCD C W+H C ++E
Sbjct: 324 IGCDQCQDWFHWHCVGLTAE 343
>AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical
protein Y71A12B.15 protein.
Length = 758
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 291 DSCEEELTNDTDINVLKNIGCDNCLAWYHLKCTIFSSEDYEN 166
+ E TNDT +VL+ D + W L IF+ +D +N
Sbjct: 686 EETEVYFTNDTVPSVLRRTHGDGIILWALLTTKIFAQQDVKN 727
>AF026211-3|AAK77634.2| 340|Caenorhabditis elegans Hypothetical
protein T13B5.9 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 213 WYHLKCTIFSSEDYENVYNKEFVCPTCNN 127
WYH+ T S+E + Y K+F C N
Sbjct: 236 WYHINGTFISTEANQYSYGKKFGCEFLEN 264
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Frame = -3
Query: 237 IGCDNCLAWYHLKC---TIFSSEDYENVYNK-----EFVCPTCNNK 124
+ CD C W H+ C + S+E + N E++C C NK
Sbjct: 982 VQCDTCHFWLHVDCCQYVVRSNEKAQKSKNPPSDDGEYICDFCTNK 1027
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Frame = -3
Query: 237 IGCDNCLAWYHLKC---TIFSSEDYENVYNK-----EFVCPTCNNK 124
+ CD C W H+ C + S+E + N E++C C NK
Sbjct: 982 VQCDTCHFWLHVDCCQYVVRSNEKAQKSKNPPSDDGEYICDFCTNK 1027
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,764
Number of Sequences: 27780
Number of extensions: 225306
Number of successful extensions: 698
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -