Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g08
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 242 3e-65
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 120 3e-28
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 106 3e-24
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 102 6e-23
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 75 7e-15
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 75 1e-14
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 65 8e-12
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 44 2e-05
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 30 0.37
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 27 2.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.9
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 242 bits (593), Expect = 3e-65
Identities = 113/212 (53%), Positives = 155/212 (73%), Gaps = 2/212 (0%)
Frame = -1
Query: 701 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
I+HAG +LGI+A DGI+LAAE++ T+KLL++ EK Y + D+M+C+VAG+T+DAN+L
Sbjct: 28 INHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILI 87
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQL 342
N R + Q+YL + E +PCEQLV +CD+KQ YTQYGG RPFGVS LY GWD GYQL
Sbjct: 88 NYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQL 147
Query: 341 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLT 162
+QS+PSGNYG W+A IG NS + S ++QEYK+ + L EA A+A+K LSKTLD LT
Sbjct: 148 FQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD-DINLDEASAMAVKFLSKTLDSNSLT 206
Query: 161 PEKVEMATLTR--KDNKTIIRILTNTEVEKLI 72
EK+E AT+T+ NK + +I + E+ +++
Sbjct: 207 HEKIEFATITKDTTKNKMVCKIWKSDEINEVL 238
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 120 bits (288), Expect = 3e-28
Identities = 76/188 (40%), Positives = 108/188 (57%), Gaps = 1/188 (0%)
Frame = -1
Query: 686 TSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLTNELRL 507
TS+GI ATDG++LA E++ T++L EK + D+ +G+ D VL ++ R
Sbjct: 33 TSVGIKATDGVVLATEKKPTSELAIGASL-EKVCAITPDIGMVYSGMGPDFRVLVDKSRK 91
Query: 506 IAQR-YLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSD 330
+AQ Y Y E P + LV + V Q TQ GG RPFGVS+L G D+ G LYQ D
Sbjct: 92 VAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVD 150
Query: 329 PSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKV 150
PSG Y WKAT IG +S AA + L++ Y + E L +A AI L +T + +LT + +
Sbjct: 151 PSGTYFAWKATAIGKSSTAAKTFLEKRYND-ELELDDAVHTAILALKETFE-GELTEDNI 208
Query: 149 EMATLTRK 126
E+A ++ K
Sbjct: 209 EIAVVSTK 216
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 106 bits (255), Expect = 3e-24
Identities = 64/196 (32%), Positives = 109/196 (55%), Gaps = 6/196 (3%)
Frame = -1
Query: 701 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
I T++G+ D ++L E+R T+ L+ E EK ++++ + C+++G+T+DA +
Sbjct: 31 IKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEKLFEIDSHIGCAISGLTADARTII 89
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ-YGGK-----RPFGVSILYMGWDK 360
R+ Q + Y E E +CD+ + + G+ RPFGV++L G D+
Sbjct: 90 EHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDE 149
Query: 359 HYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTL 180
H G QLY S+PSG Y ++A IG+ S A S L +E+ + TL EA+ L +KVL + +
Sbjct: 150 H-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF-HKDMTLEEAEVLILKVLRQVM 207
Query: 179 DMTKLTPEKVEMATLT 132
+ KL + V++A +T
Sbjct: 208 E-EKLDSKNVQLAKVT 222
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 102 bits (244), Expect = 6e-23
Identities = 59/185 (31%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Frame = -1
Query: 686 TSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLTNELRL 507
T++ + + I++ ER+N KL + F +K +++ + + AG+ +DA +L ++ R+
Sbjct: 32 TAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKARV 90
Query: 506 IAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGY-QLYQSD 330
AQ + L + + E L ++ V+Q YTQ GG RPFGVS L G+D ++YQ++
Sbjct: 91 EAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTE 150
Query: 329 PSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKV 150
P+G Y WKAT IG S AA L++ +KE L+ + + + V S L++ + +
Sbjct: 151 PAGIYNAWKATAIGRASKAAREYLEKNWKEG---LSRDETIHLAV-SSLLEVVQTASGNI 206
Query: 149 EMATL 135
E+A +
Sbjct: 207 ELAIM 211
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 75.4 bits (177), Expect = 7e-15
Identities = 52/199 (26%), Positives = 101/199 (50%), Gaps = 2/199 (1%)
Frame = -1
Query: 701 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
I ++G+++ +L A +RN +L + +K +++D + ++AG+ DA VL+
Sbjct: 29 IKQGSATVGLVSKTHAVLVALKRNAEELSS---YQKKLIRIDDHIGIAIAGLAPDARVLS 85
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQL 342
N ++ A + IP +L+S + + Q TQ G+RP+GV L +G+D+ G L
Sbjct: 86 NYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHL 144
Query: 341 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AIKVLSKTLDM-TK 168
+ PSG + T +G+ S +A + +++ + E L A++ L TL +
Sbjct: 145 LEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQE 204
Query: 167 LTPEKVEMATLTRKDNKTI 111
LT E V ++ + + + T+
Sbjct: 205 LTEENVSISVIGKDEKYTL 223
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 74.9 bits (176), Expect = 1e-14
Identities = 50/209 (23%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Frame = -1
Query: 698 SHAG-TSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
++AG TS+G+ + + ++++ +KL+D + + + + C + G +DA
Sbjct: 31 NNAGITSVGVTGKNCACVISQKKVPDKLID-ASTVKHVFPITKGIGCVMTGSIADARAQV 89
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQL 342
+ R A + + G +PC+ L + ++ Q TQ RP GV++ + D G L
Sbjct: 90 SRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSL 149
Query: 341 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKEN--ETTLAEAQALAIKVLSKTLDMTK 168
++ DP+G Y G+KAT G ++ L++ +K++ + L + I+ L +L T
Sbjct: 150 FKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLS-TD 208
Query: 167 LTPEKVEMATLTRKDNKTIIRILTNTEVE 81
++++ + +D+K R+L+ E+E
Sbjct: 209 FKSTELQIGVV--EDDKP-FRVLSVEEIE 234
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 65.3 bits (152), Expect = 8e-12
Identities = 48/186 (25%), Positives = 80/186 (43%)
Frame = -1
Query: 701 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
+ +A T +GI DG++LA E+ T+KLL + + ++ + + G D +
Sbjct: 30 VENASTCIGIKCEDGVILALEKVVTSKLL-KPRVNNRIGSVDRHIGIATTGFIPDGQHIV 88
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQL 342
R A + YG IP + L + Q +T Y RPFGV +D G L
Sbjct: 89 KRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHL 147
Query: 341 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLT 162
Y +P+G Y G+ G A + L ++ + + +A A ++L T D
Sbjct: 148 YMVEPNGVYWGYNGAAAGKGRQVARNEL-EKLNFSSLKMKDAVKEAARILYATHDEENNK 206
Query: 161 PEKVEM 144
++EM
Sbjct: 207 EHEIEM 212
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 44.4 bits (100), Expect = 2e-05
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Frame = -1
Query: 701 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFXEKXYKLNDDMVCSVAGITSDANVLT 522
+ + GT++ I +LA + R+ N F + +++ DD+V +G +DA L
Sbjct: 10 VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALAL- 68
Query: 521 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKR--PFGVSILYMGWDKHYGY 348
++ I QR L + S C V+ T GKR P+ V G DK
Sbjct: 69 --VKRIQQRIDLYHDNHERKMSAQSCACMVR---TLLYGKRFFPYYVYTTVAGIDKEGKG 123
Query: 347 QLYQSDPSGNYGGWKATCIGNNSAA 273
++Y DP G+Y + C SAA
Sbjct: 124 EIYSFDPVGSYE--REWCRAGGSAA 146
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 278 HYCYRCMLLSTPHSFHWDQTGRADNHSAYPSPYT 379
HYC +C + P S+H R N + P+T
Sbjct: 400 HYCLKCFQVKPPRSYHCGACKRCINRYDHHCPWT 433
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -1
Query: 368 WDKHYGYQLYQSDPSG--NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 195
+DK YG Q D N G K +N+ + L +E K E EA+ +A KV
Sbjct: 46 YDKLYGEQDLSKDLENTLNVSGTK----DSNAEEQPAKLTKEEKRVERE--EAKRMASKV 99
Query: 194 LSKTLDMTK 168
L KT++ TK
Sbjct: 100 LIKTIERTK 108
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 518 ELRLIAQRYLLQYGESIPCEQLVS---WLCDVKQAYTQY 411
EL + RYLLQ+G S EQ + WL + + T Y
Sbjct: 728 ELLKKSTRYLLQFGLSTSLEQQIPTPYWLAPLNLSCTDY 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,330
Number of Sequences: 5004
Number of extensions: 54548
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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