Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g07
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120 43 2e-04
02_02_0601 + 12021766-12022197 41 0.001
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251 40 0.003
05_01_0207 + 1493224-1493385,1493475-1493839,1494313-1494390,149... 39 0.005
08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669 36 0.049
02_01_0225 - 1469295-1469733,1472352-1472767,1473603-1473658,147... 34 0.11
08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287 32 0.60
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 4.3
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 5.6
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 7.4
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 28 7.4
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324... 28 9.8
>05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120
Length = 362
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVK 706
P PK+P++KG+L V FDIKFP RLT K
Sbjct: 325 PIPKDPSKKGNLRVKFDIKFPARLTADQK 353
>02_02_0601 + 12021766-12022197
Length = 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVK 706
P PK+P++KG+L + F+IKFP RLT+ K
Sbjct: 106 PIPKDPSKKGNLRIKFNIKFPSRLTSEQK 134
>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
Length = 349
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVKEIF 697
P PK P +KGDL + F+I+FP RLT+ K F
Sbjct: 312 PNPKGPNKKGDLKIKFNIRFPSRLTSDQKAGF 343
>05_01_0207 +
1493224-1493385,1493475-1493839,1494313-1494390,
1496134-1496157,1496213-1496654
Length = 356
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVK 706
P KEP++KGDL + F IKFP LT+ K
Sbjct: 318 PITKEPSKKGDLKIRFQIKFPTNLTSDQK 346
>08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669
Length = 224
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLT 718
P +EP R G L + FD+ FPERLT
Sbjct: 185 PIAREPGRHGSLRIRFDVAFPERLT 209
>02_01_0225 -
1469295-1469733,1472352-1472767,1473603-1473658,
1473827-1473995
Length = 359
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTT 715
P KEP +KG+L + FD+ FP RL++
Sbjct: 322 PIRKEPGKKGNLKIKFDVTFPTRLSS 347
>08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287
Length = 342
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVKE 703
P KE R+G+L + FDI FP+RL++ ++
Sbjct: 300 PIVKENGRRGNLRIKFDIVFPKRLSSDQRQ 329
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 126 WMKYFDIVTIHAGTPTFYFSD 64
W + FD+V A PTFY SD
Sbjct: 273 WRELFDVVIAQANKPTFYNSD 293
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 504 LYILKPKLRLDILG--LLEHCVSCC 436
+Y L P LR+D+LG L+ H V CC
Sbjct: 723 MYALDPTLRVDLLGLSLICHSVVCC 747
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 698 NISLTPVVKRSGNLMSNATSRSPFL 772
++S T VVKR ++A+SRSPFL
Sbjct: 552 SLSATVVVKRGAPASTSASSRSPFL 576
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 140 TGAYAIITVFSLRHKINLKTKTHFKDTSLYTIVILKFFKNSKLTI 274
TG T+F ++ + H K+T+ +I FFK SKL++
Sbjct: 176 TGQVVYETMFVWNEFLSRAIRNHLKNTTWTVALIHGFFKQSKLSV 220
>05_01_0411 +
3243025-3243092,3243348-3243496,3243740-3243872,
3244740-3244860,3245065-3245181,3245303-3245389,
3245941-3246000,3246097-3246174,3246587-3246658,
3246767-3246925
Length = 347
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 780 EPTRKGDLLVAFDIKFPERLTTGVK 706
+ +KGDL V F++ FP+ LT K
Sbjct: 315 QSNKKGDLYVTFEVLFPKTLTDDQK 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,351,200
Number of Sequences: 37544
Number of extensions: 369981
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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