Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g07
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 792 PFPKEPTRKGDLLVAFDIKFPERLTTGVKEIFNGHF 685
           P PK P+ +GDL++ FD++FP +L    +E+   +F
Sbjct: 296 PNPKSPSHRGDLIIEFDVEFPSQLNPTQREVILRNF 331


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 792 PFPKEPTRKGDLLVAFDIKFPERL 721
           P  +  + KGDLLV FD+KFP+++
Sbjct: 311 PMRRASSDKGDLLVQFDVKFPDKI 334


>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  ECWCSSMNRDYVKIFHPNETFDWGLCNNNSL*FKTQNQFENQDSF*RHIALHNCHFKVLQ 255
           EC  +S++ D +K +   E  D   CN +++    +N FENQ    + + L     K L 
Sbjct: 383 ECGFTSISADQLKDYPKLEELDLSKCNISNI---VENTFENQKDSLKKLNLQKNKLKSLP 439

Query: 256 KL 261
            L
Sbjct: 440 NL 441


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  ECWCSSMNRDYVKIFHPNETFDWGLCNNNSL*FKTQNQFENQDSF*RHIALHNCHFKVLQ 255
           EC  +S++ D +K +   E  D   CN +++    +N FENQ    + + L     K L 
Sbjct: 383 ECGFTSISADQLKDYPKLEELDLSKCNISNI---VENTFENQKDSLKKLNLQKNKLKSLP 439

Query: 256 KL 261
            L
Sbjct: 440 NL 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,600
Number of Sequences: 27780
Number of extensions: 383306
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)