Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g06
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   1.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   5.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   5.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   5.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   6.9  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   9.1  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 417 NWYIFEHNXXNSEFAYHGSRQEISNPVQNWKQMWKGYQKAD 295
           +W   +    NS+  + G ++ I  PV +WK  WK  + A+
Sbjct: 401 DWKSKKEFLKNSKLGWDGLKKNIKTPVIHWKD-WKVIRNAE 440


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 177 QLNWFSFSKLIRKPRPWGHF 236
           Q +W++  + IRK  P+GH+
Sbjct: 554 QEDWYAKKERIRKSSPYGHY 573


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 14  PHRSSATISDQILPQRVVLP*RTTSSECAYDVYLLSSRTPACPYTRLLCNFDPVT 178
           P + S ++S+ +   ++ +    +  +CA  + LLS   PA     LL N   VT
Sbjct: 359 PTKRSFSMSEIVTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVT 413


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 287  KLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 183
            K+ QLE TI  + K+L+            T+T+P+
Sbjct: 1691 KITQLEETIENLNKQLSNPEKTDESTSSVTETKPV 1725


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 317 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPD-KFTKTEPIKLLLD 168
           G V   L+  ++ + E TIM    E TK+P   + PD  F K   I  ++D
Sbjct: 254 GHVQISLLASRIERAEPTIMAFDIETTKLP--LKFPDSSFDKIMMISYMID 302


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 326 NKCGKVIKRLMVPKLAQLENTIMGIMKELTKMP 228
           NKC   ++ + VP +    N  +GI+  L  +P
Sbjct: 207 NKCSNTLRLVWVPGVIHPNNARLGILHTLGCVP 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,408
Number of Sequences: 5004
Number of extensions: 36863
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)