Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g06
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011583-1|AAH11583.1|  409|Homo sapiens chromosome 6 open readi...    30   4.1  
BC004869-1|AAH04869.2|  409|Homo sapiens chromosome 6 open readi...    30   4.1  
AL034371-1|CAI19992.2|  409|Homo sapiens chromosome 6 open readi...    30   4.1  
AK057793-1|BAB71576.1|  288|Homo sapiens protein ( Homo sapiens ...    30   4.1  
BC009374-1|AAH09374.1|  455|Homo sapiens zinc finger protein 556...    29   9.6  
AK021699-1|BAB13878.1|  456|Homo sapiens protein ( Homo sapiens ...    29   9.6  

>BC011583-1|AAH11583.1|  409|Homo sapiens chromosome 6 open reading
           frame 168 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 305 KRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLL 171
           K +M PKL+ L+ T+ G + +     PG+R P++  K E I L +
Sbjct: 278 KYIMGPKLSTLDATVFGHLAQAMWTLPGTR-PERLIKGELINLAM 321


>BC004869-1|AAH04869.2|  409|Homo sapiens chromosome 6 open reading
           frame 168 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 305 KRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLL 171
           K +M PKL+ L+ T+ G + +     PG+R P++  K E I L +
Sbjct: 278 KYIMGPKLSTLDATVFGHLAQAMWTLPGTR-PERLIKGELINLAM 321


>AL034371-1|CAI19992.2|  409|Homo sapiens chromosome 6 open reading
           frame 168 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 305 KRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLL 171
           K +M PKL+ L+ T+ G + +     PG+R P++  K E I L +
Sbjct: 278 KYIMGPKLSTLDATVFGHLAQAMWTLPGTR-PERLIKGELINLAM 321


>AK057793-1|BAB71576.1|  288|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25064 fis, clone CBL04883. ).
          Length = 288

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 305 KRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLL 171
           K +M PKL+ L+ T+ G + +     PG+R P++  K E I L +
Sbjct: 157 KYIMGPKLSTLDATVFGHLAQAMWTLPGTR-PERLIKGELINLAM 200


>BC009374-1|AAH09374.1|  455|Homo sapiens zinc finger protein 556
           protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   SFATPQVFCHHIRSDPASKSCTS 72
           +F+ P+ F  H+RS    KSCTS
Sbjct: 432 AFSCPKAFQGHVRSHTGKKSCTS 454


>AK021699-1|BAB13878.1|  456|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11637 fis, clone HEMBA1004321, weakly similar to
           ZINC FINGER PROTEIN 184. ).
          Length = 456

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   SFATPQVFCHHIRSDPASKSCTS 72
           +F+ P+ F  H+RS    KSCTS
Sbjct: 433 AFSCPKAFQGHVRSHTGKKSCTS 455


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,756,724
Number of Sequences: 237096
Number of extensions: 1416704
Number of successful extensions: 6196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6196
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)