Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g04
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    92   7e-20
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    28   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.2  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   5.2  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   5.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.2  

>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
           Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = -3

Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLEN-RKXXXXXXXXXXXXXEVFMKTLTYTNM 230
           + EEDAA L+   EFEN + L +SE  +L+E                 +V  KT+ Y N+
Sbjct: 5   IFEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNV 64

Query: 229 FKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRIL 50
           F +FK  E   A   +L   + HKFE A L  LC E  EEA+ LIPSL  K +D+ L+ +
Sbjct: 65  FARFKTAEATYACERIL-GNRFHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGI 123

Query: 49  LDDIQTKRSLQ 17
           LD++ T R  Q
Sbjct: 124 LDELSTLRKFQ 134


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 52  VFLVLHLQIFLLMMVSVLSL--PPVFQDINLLSLPIQTCEVFLI 177
           V  +L+  I+++ + SV S   P +FQ +   SLP ++C+  ++
Sbjct: 174 VLALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQMMV 217


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 590 FPFSCNLLNKAKPSNIKCLIYH*NN 664
           FP S +++    P N +C +YH  N
Sbjct: 63  FPVSDDVIPNTNPKNCQCYLYHSTN 87


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +1

Query: 376 IADQLHPLPPHIVEVQS**WIYMVTSLKIYHKFKNTARFLLYVTSQLPLFK*YNGLFN 549
           I D L P P +    ++  W Y      +++ F   + F+ Y T     F   NG ++
Sbjct: 87  IPDYLIPAPHYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTKSFLAFGGGNGRYS 144


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 73  EDEELRILLDDIQTKRSLQY 14
           EDE L +L+ D+  +RSLQ+
Sbjct: 193 EDETLEVLMTDMSPERSLQF 212


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 216 KTKRQ*LLLDTYYNQKNFTSLNWQA 142
           + K Q ++LD  +N KNF S  WQ+
Sbjct: 566 RKKWQYMILDEAHNIKNFRSQRWQS 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,978
Number of Sequences: 5004
Number of extensions: 49874
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)