Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g04
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0122 - 895019-895398,895476-895524                               77   2e-14
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    36   0.036
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729...    32   0.58 
09_01_0149 + 2240183-2241133                                           29   4.1  
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     29   5.4  
08_02_0931 - 22708167-22709093                                         28   9.5  
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996...    28   9.5  

>02_01_0122 - 895019-895398,895476-895524
          Length = 142

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
 Frame = -3

Query: 400 EEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEV---FMKTLTYTNM 230
           EE+AA+L+  +EF  A+ LM  EV ++LE++              +V   F K+L Y   
Sbjct: 6   EENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSLQYVKR 65

Query: 229 FKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLE--GKF 74
           F ++KN + +  VR  L    L +FEL +L NLCP+T +EA AL+PSL   G+F
Sbjct: 66  FSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRF 119


>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 259 FMKTLTYTNMFKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEG 80
           F+ +       + FK    +    H L+   LHK  LASL  +C E P+    ++  +E 
Sbjct: 321 FLPSFIVLKCLQHFKEFGKVVRPLHGLRVGNLHKESLASLEKICHEFPKVCGVIVEKVEP 380

Query: 79  KFEDEELRI 53
             E  E+++
Sbjct: 381 SAEHSEIKV 389


>02_05_0571 -
           30072521-30072595,30072681-30072749,30072826-30072900,
           30072981-30073050,30073168-30073279,30073576-30073674,
           30073847-30073939,30074994-30075062,30076845-30076911
          Length = 242

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -3

Query: 205 TIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLE 83
           ++ ++R  L+   +   E+  +AN+ PET EE  AL+PSL+
Sbjct: 178 SLTSIRSPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 218


>09_01_0149 + 2240183-2241133
          Length = 316

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 52  VFLVLHLQIFLLMMVSVLSLPPVFQDINLLSLPIQTCE 165
           VFL++ L  FL++  +VL + P+  D+  L++ +QT +
Sbjct: 33  VFLLIALPSFLVLSTNVLFVQPLSMDMAELAIKLQTTD 70


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 217 KNKETIAAVRHLLQSKKLHKFELASLANLC----PETPEEAKALIPSLEGKFEDEELRIL 50
           K  +T  A+ H   + K+HK E  S  N+     P T EE K   PSL+     E++ + 
Sbjct: 590 KEDDTTTALPHPSVAIKMHK-EKPSEENMSKPNSPNTTEEMKKQDPSLDSATHTEKISLE 648

Query: 49  LD 44
           LD
Sbjct: 649 LD 650


>08_02_0931 - 22708167-22709093
          Length = 308

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 67  HLQIFLLMMVSVLSLPPVFQDINLLSLPIQ 156
           HL+++LL+  SVL++     D  LLS  IQ
Sbjct: 54  HLELYLLLSFSVLAIVDQLVDFPLLSFTIQ 83


>03_05_0207 -
           21985340-21985570,21986430-21986636,21999578-21999667,
           21999764-21999945,22000130-22001042,22003184-22003266,
           22004622-22004939,22005044-22005107
          Length = 695

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 232 MFKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDE 65
           + +K K  E +A VR ++  K++ + +  +  N C       K  +  +  K+EDE
Sbjct: 545 LVEKHKGLEKMAGVRSIIGVKRMGELDQKAFYNACKNKMPNNKMKLALVCSKWEDE 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,364
Number of Sequences: 37544
Number of extensions: 259225
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)