Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g04
         (771 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89387-1|AAC52056.1|  142|Homo sapiens RNA polymerase II subunit...   178   2e-44
U85510-1|AAC80226.1|  142|Homo sapiens RNA polymerase II subunit...   178   2e-44
BC093797-1|AAH93797.1|  142|Homo sapiens polymerase (RNA) II (DN...   178   2e-44
BC093795-1|AAH93795.1|  142|Homo sapiens polymerase (RNA) II (DN...   178   2e-44
BC017205-1|AAH17205.1|  142|Homo sapiens polymerase (RNA) II (DN...   178   2e-44
AC006011-3|AAX82034.1|   57|Homo sapiens unknown protein.             100   1e-20
AC012306-1|AAY14877.1|   84|Homo sapiens unknown protein.              83   8e-16
AK000177-1|BAA90991.1|  136|Homo sapiens protein ( Homo sapiens ...    31   6.0  

>U89387-1|AAC52056.1|  142|Homo sapiens RNA polymerase II subunit
           hsRPB4 protein.
          Length = 142

 Score =  178 bits (433), Expect = 2e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLD 44
           +FKN+ETIA+VR LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LD
Sbjct: 73  RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132

Query: 43  DIQTKRSLQY 14
           DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142


>U85510-1|AAC80226.1|  142|Homo sapiens RNA polymerase II subunit
           hsRPB4 protein.
          Length = 142

 Score =  178 bits (433), Expect = 2e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLD 44
           +FKN+ETIA+VR LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LD
Sbjct: 73  RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132

Query: 43  DIQTKRSLQY 14
           DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142


>BC093797-1|AAH93797.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score =  178 bits (433), Expect = 2e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLD 44
           +FKN+ETIA+VR LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LD
Sbjct: 73  RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132

Query: 43  DIQTKRSLQY 14
           DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142


>BC093795-1|AAH93795.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score =  178 bits (433), Expect = 2e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLD 44
           +FKN+ETIA+VR LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LD
Sbjct: 73  RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132

Query: 43  DIQTKRSLQY 14
           DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142


>BC017205-1|AAH17205.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score =  178 bits (433), Expect = 2e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLD 44
           +FKN+ETIA+VR LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LD
Sbjct: 73  RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132

Query: 43  DIQTKRSLQY 14
           DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142


>AC006011-3|AAX82034.1|   57|Homo sapiens unknown protein.
          Length = 57

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/57 (82%), Positives = 51/57 (89%)
 Frame = -3

Query: 184 LLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILLDDIQTKRSLQY 14
           LL  KKLHKFELA LANLCPET EE+KALIPSLEG+FEDEEL+ +LDDIQTKRS QY
Sbjct: 1   LLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 57


>AC012306-1|AAY14877.1|   84|Homo sapiens unknown protein.
          Length = 84

 Score = 83.4 bits (197), Expect = 8e-16
 Identities = 44/72 (61%), Positives = 50/72 (69%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMFK 224
           VEEDA+ L FPKEFE AETL+ SEV MLLE+RK             EVFMKTL YT  F 
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72

Query: 223 KFKNKETIAAVR 188
           +FKN+ETIA+VR
Sbjct: 73  RFKNRETIASVR 84


>AK000177-1|BAA90991.1|  136|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20170 fis, clone COL09549. ).
          Length = 136

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 178 QSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDE 65
           +S K+H   LA LAN C   P E+K+  P  E K   E
Sbjct: 39  KSGKVHACTLARLANFCVTPPSESKSKSPPPERKNRGE 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,349,581
Number of Sequences: 237096
Number of extensions: 1550062
Number of successful extensions: 2837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2837
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)