Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g04
(771 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT023309-1|AAY55725.1| 139|Drosophila melanogaster IP02340p pro... 190 2e-48
BT023308-1|AAY55724.1| 139|Drosophila melanogaster IP02337p pro... 190 2e-48
BT022168-1|AAY51562.1| 139|Drosophila melanogaster IP01323p pro... 190 2e-48
AF544020-1|AAN88032.1| 139|Drosophila melanogaster RNA polymera... 188 1e-47
AF544019-1|AAN88031.1| 139|Drosophila melanogaster RNA polymera... 188 1e-47
AE014297-2478|AAF55522.4| 150|Drosophila melanogaster CG33520-P... 177 1e-44
AY051816-1|AAK93240.1| 845|Drosophila melanogaster LD32311p pro... 29 9.3
AJ005441-1|CAA06544.2| 845|Drosophila melanogaster Kruppel homo... 29 9.3
AJ005440-1|CAA06543.2| 791|Drosophila melanogaster Kruppel homo... 29 9.3
AE014134-1049|AAG22417.1| 791|Drosophila melanogaster CG18783-P... 29 9.3
AE014134-1048|AAF52343.2| 845|Drosophila melanogaster CG18783-P... 29 9.3
>BT023309-1|AAY55725.1| 139|Drosophila melanogaster IP02340p
protein.
Length = 139
Score = 190 bits (462), Expect = 2e-48
Identities = 94/131 (71%), Positives = 105/131 (80%)
Frame = -3
Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMF 227
+V+EDAADLQFPKEFENAETL+ISEV MLL++RK EVFMKT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 226 KKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILL 47
+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG+FEDEELR +L
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 46 DDIQTKRSLQY 14
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>BT023308-1|AAY55724.1| 139|Drosophila melanogaster IP02337p
protein.
Length = 139
Score = 190 bits (462), Expect = 2e-48
Identities = 94/131 (71%), Positives = 105/131 (80%)
Frame = -3
Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMF 227
+V+EDAADLQFPKEFENAETL+ISEV MLL++RK EVFMKT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 226 KKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILL 47
+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG+FEDEELR +L
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 46 DDIQTKRSLQY 14
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>BT022168-1|AAY51562.1| 139|Drosophila melanogaster IP01323p
protein.
Length = 139
Score = 190 bits (462), Expect = 2e-48
Identities = 94/131 (71%), Positives = 105/131 (80%)
Frame = -3
Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMF 227
+V+EDAADLQFPKEFENAETL+ISEV MLL++RK EVFMKT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 226 KKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILL 47
+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG+FEDEELR +L
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 46 DDIQTKRSLQY 14
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>AF544020-1|AAN88032.1| 139|Drosophila melanogaster RNA polymerase
II accessory factorrpb4 protein.
Length = 139
Score = 188 bits (457), Expect = 1e-47
Identities = 93/131 (70%), Positives = 104/131 (79%)
Frame = -3
Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMF 227
+V+EDAADLQFPKEFENAETL+ISEV MLL++RK EVFMKT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 226 KKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILL 47
+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG+FEDEE R +L
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEEAREIL 128
Query: 46 DDIQTKRSLQY 14
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>AF544019-1|AAN88031.1| 139|Drosophila melanogaster RNA polymerase
II accessory factorrpb4 protein.
Length = 139
Score = 188 bits (457), Expect = 1e-47
Identities = 93/131 (70%), Positives = 104/131 (79%)
Frame = -3
Query: 406 VVEEDAADLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNMF 227
+V+EDAADLQFPKEFENAETL+ISEV MLL++RK EVFMKT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 226 KKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRILL 47
+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG+FEDEE R +L
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEEAREIL 128
Query: 46 DDIQTKRSLQY 14
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>AE014297-2478|AAF55522.4| 150|Drosophila melanogaster CG33520-PD,
isoform D protein.
Length = 150
Score = 177 bits (431), Expect = 1e-44
Identities = 94/142 (66%), Positives = 105/142 (73%), Gaps = 11/142 (7%)
Frame = -3
Query: 406 VVEEDAADLQFPKE-----------FENAETLMISEVDMLLENRKXXXXXXXXXXXXXEV 260
+V+EDAADLQFPKE FENAETL+ISEV MLL++RK EV
Sbjct: 9 MVDEDAADLQFPKEKKTLSFLFVSEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEV 68
Query: 259 FMKTLTYTNMFKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEG 80
FMKT YT+ F+KFKNKETI + R LL KKLHKFELA+L NLCPE PEEAKALIPSLEG
Sbjct: 69 FMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEG 128
Query: 79 KFEDEELRILLDDIQTKRSLQY 14
+FEDEELR +LDDI TKRSLQY
Sbjct: 129 RFEDEELRQILDDIGTKRSLQY 150
>AY051816-1|AAK93240.1| 845|Drosophila melanogaster LD32311p
protein.
Length = 845
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 286 QQIHFELFYFPITCQLQISLKFQHSQ 363
QQ HFEL P Q+Q+ L+ QH Q
Sbjct: 100 QQEHFELLQTPQQRQMQLQLQDQHQQ 125
>AJ005441-1|CAA06544.2| 845|Drosophila melanogaster Kruppel homolog
protein.
Length = 845
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 286 QQIHFELFYFPITCQLQISLKFQHSQ 363
QQ HFEL P Q+Q+ L+ QH Q
Sbjct: 100 QQEHFELLQTPQQRQMQLQLQDQHQQ 125
>AJ005440-1|CAA06543.2| 791|Drosophila melanogaster Kruppel homolog
protein.
Length = 791
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 286 QQIHFELFYFPITCQLQISLKFQHSQ 363
QQ HFEL P Q+Q+ L+ QH Q
Sbjct: 46 QQEHFELLQTPQQRQMQLQLQDQHQQ 71
>AE014134-1049|AAG22417.1| 791|Drosophila melanogaster CG18783-PA,
isoform A protein.
Length = 791
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 286 QQIHFELFYFPITCQLQISLKFQHSQ 363
QQ HFEL P Q+Q+ L+ QH Q
Sbjct: 46 QQEHFELLQTPQQRQMQLQLQDQHQQ 71
>AE014134-1048|AAF52343.2| 845|Drosophila melanogaster CG18783-PB,
isoform B protein.
Length = 845
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 286 QQIHFELFYFPITCQLQISLKFQHSQ 363
QQ HFEL P Q+Q+ L+ QH Q
Sbjct: 100 QQEHFELLQTPQQRQMQLQLQDQHQQ 125
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,782,148
Number of Sequences: 53049
Number of extensions: 471838
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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