Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g04
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical ...   135   3e-32
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    33   0.23 
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    28   8.5  

>AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical
           protein F43E2.2 protein.
          Length = 232

 Score =  135 bits (327), Expect = 3e-32
 Identities = 68/131 (51%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = -3

Query: 403 VEEDAADLQFPKEFENA--ETLMISEVDMLLENRKXXXXXXXXXXXXXEVFMKTLTYTNM 230
           VEEDAA+ +FPKEFE    + L+ +EV +LLE+R+             EVF+KTL Y   
Sbjct: 102 VEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNYARR 161

Query: 229 FKKFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRIL 50
             +FKN+ETI AVR +   K LHKFE+A +ANLCPE  EEAKAL+PSLE K E+ EL  +
Sbjct: 162 MSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEV 221

Query: 49  LDDIQTKRSLQ 17
           L D+Q+KR+ Q
Sbjct: 222 LKDLQSKRTFQ 232


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 127  PETPEEAKALIPSLEGKFEDEELRILLDDIQTK 29
            P+T +  K+++P LE   E E L ILL D+ TK
Sbjct: 1626 PKTKKPKKSMLPKLEKTTESESLTILLMDLNTK 1658


>Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical
           protein F16D3.2 protein.
          Length = 689

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = -3

Query: 214 NKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIPSLEGKFEDEELRIL 50
           +K+   AVR ++  KKL++ E  SL NL  E   + K LIP   GK +++ L+ L
Sbjct: 319 SKKIAKAVRKIM--KKLNEGEKLSLENLFDEIERKNKILIPGKNGKEKEDFLKDL 371


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 127  PETPEEAKALIPSLEGKFEDEELRILLDDIQTK 29
            P+T +  K+++P LE   E E L ILL D+ TK
Sbjct: 1626 PKTKKPKKSMLPKLEKTTESESLTILLMDLNTK 1658


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 241 YTNMFK--KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIP 92
           +T +F+  + +NK  + + RHL+  ++ H F+ A+++++  E   E    +P
Sbjct: 213 FTKLFRGSQIRNKNDLPSGRHLVNYRQNHAFDFAAMSHIWKENKMENLPKLP 264


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 241 YTNMFK--KFKNKETIAAVRHLLQSKKLHKFELASLANLCPETPEEAKALIP 92
           +T +F+  + +NK  + + RHL+  ++ H F+ A+++++  E   E    +P
Sbjct: 213 FTKLFRGSQIRNKNDLPSGRHLVNYRQNHAFDFAAMSHIWKENKMENLPKLP 264


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +3

Query: 390 ASSSTTYCRGPVMMMDLYGD*LKNLSQIQEYS*IFII 500
           +++   YC  P +M+ +YGD  +N + +  +  + ++
Sbjct: 383 STNELAYCAKPAVMVPIYGDQTRNANMLARHGSVIVL 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,495
Number of Sequences: 27780
Number of extensions: 267444
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)