Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g03
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    75   9e-15
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   7.0  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   7.0  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    26   7.0  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
 Frame = -1

Query: 774 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC- 598
           N KA   ++PV+GGHS  TIVPLLSQ    VE+  +  +    +++     + KAK G  
Sbjct: 191 NGKAELLHIPVVGGHSGATIVPLLSQG--GVELTGEKRDALIHRIQFGGDEVVKAKAGAG 248

Query: 597 IPNLSVAYSSFLFTKSILDALEG-SPAKIHAFVDN---NDFGTSYFSSLVNLDKNGVKEM 430
              LS+AY+      S+L AL G S  +   FV++    D G  +F+S V L K+GV  +
Sbjct: 249 SATLSMAYAGARMASSVLRALAGESGVEECTFVESPLYKDQGIDFFASRVTLGKDGVDTI 308

Query: 429 VRYSEFSKFECDLIEKSLQQLRKDVSKGRKIL 334
               + + +E  L++ +L +L+K ++KG + +
Sbjct: 309 HPVGKINDYEESLLKVALGELKKSITKGEQFV 340


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 588 LSVAYSSFLFTKSILDALEGSPAKIHAFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFS 409
           L + + + L    +L      P K+  F +  D   SY + L++ DK     + RYS+ +
Sbjct: 163 LDMPHVNILSKADLLCTYGTLPMKLDFFTEVQDL--SYLAPLLDRDKR----LQRYSDLN 216

Query: 408 KFECDLIE 385
           K  C+L+E
Sbjct: 217 KAICELVE 224


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 380 VCSSCEKTYLKEGKYWNWRK-CSSFGKNENQSLFEFII 270
           + SS +++ L +G ++ W + CS+F K    SL EFI+
Sbjct: 545 ISSSVKQSLLLDG-FFRWSQHCSNFNKESMLSLREFIM 581


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 590 LGIHPLLAFVIIPSQFRNLMVNSSKSFSFISTVGLA*DNNG 712
           + + P  +  ++P  FR+LMVNS            A D NG
Sbjct: 578 MAVLPARSQALVPPCFRDLMVNSESPIIDFYPENFALDQNG 618


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 528 SPAKIHAFVDNNDFGTSYFSSLVN 457
           SP K H FV+  DF   +  SL++
Sbjct: 309 SPVKFHVFVEQADFTFGFNDSLIS 332


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 281 RKGFDFHFYQKMSIYASSNIFLPLDTS 361
           RKGFDF +YQ+  +        P  TS
Sbjct: 7   RKGFDFEYYQRNLLLQEKGFPTPKATS 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,182
Number of Sequences: 5004
Number of extensions: 57230
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)