Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g03
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1220 + 35493575-35494765 87 1e-17
08_02_0774 - 21047696-21048889 86 3e-17
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 85 8e-17
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 82 6e-16
07_03_1371 - 26100553-26101767 66 2e-11
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 66 2e-11
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 63 3e-10
01_06_1643 - 38878597-38878725,38878818-38878934,38879118-388794... 30 2.4
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 29 3.2
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 29 3.2
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 28 9.6
>01_06_1220 + 35493575-35494765
Length = 396
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Frame = -1
Query: 780 ENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRG 601
+ NLK D VPV+GGH+ TI+PLLS+ +P+V ++ EE T +++N + +AK G
Sbjct: 235 KKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAG 294
Query: 600 C-IPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMV 427
LS+AY++ F +S L AL G P FV + +F+S V L KNGV+ ++
Sbjct: 295 AGSATLSMAYAAARFVESSLRALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESII 354
Query: 426 R--YSEFSKFECDLIEKSLQQLRKDVSKG 346
+++E +E +L+ + KG
Sbjct: 355 SSDLEGVTEYEAKALESLKPELKASIEKG 383
>08_02_0774 - 21047696-21048889
Length = 397
Score = 85.8 bits (203), Expect = 3e-17
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Frame = -1
Query: 780 ENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRG 601
+ NLK D VPV+GGH+ TI+PLLS+ P+V +++ E+ T +++N + +AK G
Sbjct: 235 KKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAG 294
Query: 600 C-IPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMV 427
LS+AY++ F +S L AL G P FV + +F+S V L KNGV+ ++
Sbjct: 295 AGSATLSMAYAAARFVESSLRALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESII 354
Query: 426 R--YSEFSKFECDLIEKSLQQLRKDVSKG 346
+++E +E +L+ + KG
Sbjct: 355 SADLEGVTEYEAKALEALKSELKASIEKG 383
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 84.6 bits (200), Expect = 8e-17
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Frame = -1
Query: 774 NLKANDCYVPVIGGHSDKTIVPLLSQAKP-TVEMKEKDLEEFTIKLRNCDGMITKAKRG- 601
N+ D VPV+GGH+ TI+PL SQA P T + ++D++ T + ++ + +AK G
Sbjct: 189 NVPVTDVNVPVVGGHAGITILPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGK 248
Query: 600 CIPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVR 424
LS+AY+ +F + L L G P + +FV + +F+S V L KNGV+E++
Sbjct: 249 GSATLSMAYAGAVFANACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVEEVLG 308
Query: 423 YSEFSKFECDLIEKSLQQLRKDVSKGRK 340
+ S FE + +E +L+ + KG K
Sbjct: 309 LGQLSDFEKEGLENLKGELKASIEKGIK 336
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 81.8 bits (193), Expect = 6e-16
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Frame = -1
Query: 774 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVE-MKEKDLEEFTIKLRNCDGMITKAKRGC 598
N+ + VPV+GGH+ TI+PL SQA P + +D++ T + ++ + +AK G
Sbjct: 188 NVPVTEVNVPVVGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGK 247
Query: 597 -IPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVR 424
LS+AY+ +F + L L G P + +FV + +F+S V L KNGV+E++
Sbjct: 248 GSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 307
Query: 423 YSEFSKFECDLIEKSLQQLRKDVSKGRK 340
+ S+FE + +E +L+ + KG K
Sbjct: 308 LGQLSEFEKEGLENLKGELKSSIEKGIK 335
>07_03_1371 - 26100553-26101767
Length = 404
Score = 66.5 bits (155), Expect = 2e-11
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Frame = -1
Query: 759 DCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKR---GCIPN 589
D VPV+GGH+ TI+PLLS+A+P ++++E T +++N + +AK G
Sbjct: 244 DVDVPVVGGHAAATILPLLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSAT 303
Query: 588 LSVAYSSFLFTKSILDALEGSPAKIH--AFVDNNDF-GTSYFSSLVNLDKNGVKEM---- 430
LS+AY++ F ++ L L+G A ++ ++V +F+ V L ++GV+E+
Sbjct: 304 LSMAYAAARFLEASLRGLDGD-ADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAG 362
Query: 429 VRYSEFSKFECDLIEKSLQQLRKDVSKG 346
++FE +E QL+K + KG
Sbjct: 363 AELRGLTEFEARALEALKPQLKKSIDKG 390
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 66.5 bits (155), Expect = 2e-11
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = -1
Query: 759 DCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLS 583
D VPV+GGH+ TI+PLLSQ P ++ T +++N + +AK G LS
Sbjct: 209 DVNVPVVGGHAGVTILPLLSQVHPPCSFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLS 268
Query: 582 VAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSK 406
+A+++ F + L A+ G + ++V + +F++ V L + G +E++ +
Sbjct: 269 MAFAAAKFGDACLRAMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLND 328
Query: 405 FECDLIEKSLQQLRKDVSKG 346
FE +E + ++L + + KG
Sbjct: 329 FERAGLEMAKKELMESIQKG 348
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = -1
Query: 771 LKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGCIP 592
L D VPVIGGH+ TI+PLLSQ P +++ T +++N + +
Sbjct: 220 LDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVE------- 272
Query: 591 NLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSE 415
AY++ F + L L G + +FV + +F+S V L + G++E++
Sbjct: 273 ----AYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGP 328
Query: 414 FSKFECDLIEKSLQQLRKDVSKG 346
++FE +EK+ ++L + + KG
Sbjct: 329 LNEFERAGLEKAKKELAESIQKG 351
>01_06_1643 -
38878597-38878725,38878818-38878934,38879118-38879450,
38880366-38880758
Length = 323
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 690 PTVEMKEKDLEEFTIKLRNCDGMITKAKRGCIPNL 586
P+ +K LEE IK N G IT K+G IP+L
Sbjct: 277 PSSLQDQKKLEE-AIKFANACGAITATKKGAIPSL 310
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -1
Query: 504 VDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQLRKDVSKGRKIL 334
+DN SSL++ + + + +S+ +K +L E +QQL ++V + R L
Sbjct: 342 IDNKGIRIRELSSLLSSKEADYRNLCSFSDQTKESLELAEAKIQQLEEEVHRTRNDL 398
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 350 LDTSFRNCCKLFSIKSHSNFENSEYLTISL 439
LD S R C L+ +SH++F SE L SL
Sbjct: 1555 LDPSLRRLCMLYYRRSHNSFSASERLNPSL 1584
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = -1
Query: 468 SLVNLDK-----NGVKEMVRYSEFSKFECDLIEKS 379
S+ NLDK +G+K M+ +SE +K +C + + S
Sbjct: 398 SVFNLDKTEDNCSGIKSMLNFSEMAKTDCKMCDMS 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,556
Number of Sequences: 37544
Number of extensions: 286260
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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