Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g03
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.                 89   2e-17
BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,...    89   2e-17
AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase pr...    89   2e-17
AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.              89   2e-17
DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate de...    83   1e-15

>CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.
          Length = 338

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = -1

Query: 750 VPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAY 574
           VPVIGGH+ KTI+PL+SQ  P V+  +  L   T +++     + KAK G     LS+AY
Sbjct: 194 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAY 253

Query: 573 SSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 397
           +   F  S++DA+ G    +  +FV + +   +YFS+ + L K G+++ +   + S FE 
Sbjct: 254 AGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEE 313

Query: 396 DLIEKSLQQLRKDVSKGRKILE 331
            +I  ++ +L+  + KG   ++
Sbjct: 314 KMISDAIPELKASIKKGEDFVK 335


>BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,
           NAD (mitochondrial) protein.
          Length = 338

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = -1

Query: 750 VPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAY 574
           VPVIGGH+ KTI+PL+SQ  P V+  +  L   T +++     + KAK G     LS+AY
Sbjct: 194 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAY 253

Query: 573 SSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 397
           +   F  S++DA+ G    +  +FV + +   +YFS+ + L K G+++ +   + S FE 
Sbjct: 254 AGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEE 313

Query: 396 DLIEKSLQQLRKDVSKGRKILE 331
            +I  ++ +L+  + KG   ++
Sbjct: 314 KMISDAIPELKASIKKGEDFVK 335


>AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase
           precursor protein.
          Length = 338

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = -1

Query: 750 VPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAY 574
           VPVIGGH+ KTI+PL+SQ  P V+  +  L   T +++     + KAK G     LS+AY
Sbjct: 194 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAY 253

Query: 573 SSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 397
           +   F  S++DA+ G    +  +FV + +   +YFS+ + L K G+++ +   + S FE 
Sbjct: 254 AGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEE 313

Query: 396 DLIEKSLQQLRKDVSKGRKILE 331
            +I  ++ +L+  + KG   ++
Sbjct: 314 KMISDAIPELKASIKKGEDFVK 335


>AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.
          Length = 316

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = -1

Query: 750 VPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAY 574
           VPVIGGH+ KTI+PL+SQ  P V+  +  L   T +++     + KAK G     LS+AY
Sbjct: 172 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAY 231

Query: 573 SSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 397
           +   F  S++DA+ G    +  +FV + +   +YFS+ + L K G+++ +   + S FE 
Sbjct: 232 AGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEE 291

Query: 396 DLIEKSLQQLRKDVSKGRKILE 331
            +I  ++ +L+  + KG   ++
Sbjct: 292 KMISDAIPELKASIKKGEDFVK 313


>DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate
           dehydrogenase 2, NAD protein.
          Length = 305

 Score = 83.0 bits (196), Expect = 1e-15
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
 Frame = -1

Query: 750 VPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAY 574
           VPVIGGH+ KTI+PL+SQ  P V+  +  L   T +++     + KAK G     LS+AY
Sbjct: 173 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAY 232

Query: 573 SSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 397
           +   F  S++DA+ G    +  +FV + +   +YFS+ + L K G+++ +   + S FE 
Sbjct: 233 AGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEE 292

Query: 396 DLIEKSLQQLR 364
            +I  ++ +L+
Sbjct: 293 KMISDAIPELK 303


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,423,733
Number of Sequences: 237096
Number of extensions: 1687386
Number of successful extensions: 3571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3565
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)