Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g03
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 87 1e-17
U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical p... 31 0.93
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 29 3.7
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 29 3.7
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 29 3.7
Z83230-4|CAB05744.1| 275|Caenorhabditis elegans Hypothetical pr... 29 5.0
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 29 5.0
U41033-1|AAA82372.1| 317|Caenorhabditis elegans Hypothetical pr... 28 6.6
U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl transfe... 28 6.6
AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans alpha1,3-fuco... 28 6.6
Z29117-13|CAA82377.2| 435|Caenorhabditis elegans Hypothetical p... 28 8.7
AC024761-3|AAF59465.1| 159|Caenorhabditis elegans Hypothetical ... 28 8.7
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 87.4 bits (207), Expect = 1e-17
Identities = 46/142 (32%), Positives = 84/142 (59%), Gaps = 2/142 (1%)
Frame = -1
Query: 765 ANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPN 589
A+ VPV+GGH+ TI+PLLSQ KP+ + E+++ + T ++++ + AK G
Sbjct: 193 ASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSAT 252
Query: 588 LSVAYSSFLFTKSILDALEGSPAKIHAFVDNNDF-GTSYFSSLVNLDKNGVKEMVRYSEF 412
LS+A + F +++ ++G A+V ++ G YFS+ V L NGV++++ +
Sbjct: 253 LSMALAGARFANALVRGIKGEKNVQCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKV 312
Query: 411 SKFECDLIEKSLQQLRKDVSKG 346
S +E LI+ S+ +L K+++KG
Sbjct: 313 SAYEQKLIDASVPELNKNIAKG 334
>U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical
protein C43E11.11 protein.
Length = 656
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = -1
Query: 537 LEGSPAKIHAFVDNNDFGTSYFSSLVNLDKNGVKEMVRY----SEFSKFECDLIEKSLQQ 370
L S A++H V+ NDF T++ ++ V+L + ++E R +E S+ + IEK ++
Sbjct: 326 LTHSLARLHKLVEENDFSTAHANAFVDLINSAMEEEHRKVDWDAELSQKMSNNIEKCIEI 385
Query: 369 LRK 361
+ K
Sbjct: 386 IAK 388
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 407 FENSEYLTISLTPFLSRFTRLEKYDVPKSLLS 502
F + +TISLT F++++T LEK V + ++S
Sbjct: 17 FPHKFNVTISLTDFITKYTPLEKEQVVEEIVS 48
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 407 FENSEYLTISLTPFLSRFTRLEKYDVPKSLLS 502
F + +TISLT F++++T LEK V + ++S
Sbjct: 99 FPHKFNVTISLTDFITKYTPLEKEQVVEEIVS 130
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 407 FENSEYLTISLTPFLSRFTRLEKYDVPKSLLS 502
F + +TISLT F++++T LEK V + ++S
Sbjct: 75 FPHKFNVTISLTDFITKYTPLEKEQVVEEIVS 106
>Z83230-4|CAB05744.1| 275|Caenorhabditis elegans Hypothetical
protein F56A8.4 protein.
Length = 275
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -1
Query: 561 FTKSILDALEGSPAKIHAFVDNNDFGTSYFSSLVNLDKNG-VKEMVRYSEFSKFEC--DL 391
FT S L+A KI ++ + NLDKNG ++ +V Y +++K + DL
Sbjct: 155 FTTSSLEAWNPKYLKIKTPYFSSWMTNLFIQDCCNLDKNGKLRRIVFYGKYNKVQILEDL 214
Query: 390 IEKSLQQ-LRKDVSKGRKILE 331
K ++ R+++ G K L+
Sbjct: 215 NSKRFEKGRRQEIYPGPKPLD 235
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 591 NLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVR 424
N+S +SFL K + + L G+ A +H A V + S+ N + NG K++++
Sbjct: 49 NISYIKASFLDDKVLENILNGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIK 105
>U41033-1|AAA82372.1| 317|Caenorhabditis elegans Hypothetical
protein K09E3.5 protein.
Length = 317
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 313 DEHLRQFQYFPSFRYVFSQL 372
+ HLRQ+ +FP FRY ++ L
Sbjct: 107 ESHLRQWIFFPYFRYYYNTL 126
>U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl
transferase protein 5 protein.
Length = 378
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 449 LSRFTRLEKYDVPKSLLSTKA*IFAGLPSKASRMLLVKRKLLYATDKLGIHPLLAFV--I 622
LS F + +YD+P +++ + FAGL + + Y TD HP AFV
Sbjct: 109 LSFFNKNRRYDIPYIMMAMENPFFAGLTVYHN---FFNWTMTYRTDSDIFHPYGAFVKSY 165
Query: 623 IPSQFRNLMVNSSKS 667
+P++ + +SK+
Sbjct: 166 VPAEVNYSEIWNSKT 180
>AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans
alpha1,3-fucosyltransferase homologueprotein.
Length = 378
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 449 LSRFTRLEKYDVPKSLLSTKA*IFAGLPSKASRMLLVKRKLLYATDKLGIHPLLAFV--I 622
LS F + +YD+P +++ + FAGL + + Y TD HP AFV
Sbjct: 109 LSFFNKNRRYDIPYIMMAMENPFFAGLTVYHN---FFNWTMTYRTDSDIFHPYGAFVKSY 165
Query: 623 IPSQFRNLMVNSSKS 667
+P++ + +SK+
Sbjct: 166 VPAEVNYSEIWNSKT 180
>Z29117-13|CAA82377.2| 435|Caenorhabditis elegans Hypothetical
protein C48B4.2 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +2
Query: 287 GFDFHFYQKMSIYASSNIFLPLDTSFRNCCKLFSIKSHSNFENSEYL---TISLTPFLSR 457
GFD + QKMS+Y P+D F + C L S + EYL +++TP R
Sbjct: 51 GFDHYELQKMSLYLEMREGKPVD--FADFCYLMS--KCKGYRLREYLFRAALTVTPKNQR 106
Query: 458 ---FTRLEKY 478
F+ L++Y
Sbjct: 107 IHVFSELQRY 116
>AC024761-3|AAF59465.1| 159|Caenorhabditis elegans Hypothetical
protein Y38C1AA.7 protein.
Length = 159
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -3
Query: 286 FSSLLFYFIYKSSRLICTNHLIIINYQQPRKT*PYHREQLLRINSTSELTVSGRFLVIIL 107
F + LFYFI+ + + H I +N RE+L ++ S+SE V G+ +IL
Sbjct: 41 FLAKLFYFIFLGGAVAISAHNIGLNVD--------GREELNKVLSSSENEVRGKSAALIL 92
Query: 106 I 104
+
Sbjct: 93 V 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,016
Number of Sequences: 27780
Number of extensions: 304591
Number of successful extensions: 792
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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