Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14g03
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.34 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 57  KVQNVKIS-VEFKLFCDIKIITRNRPETVNSEVELILNN 170
           +V ++++S  E  LFC + +I  +RP   N+E+   ++N
Sbjct: 326 RVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHN 364


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 599 HPLLAFVIIPSQFRNLMVNSSKSFSFISTVGLA*DNN 709
           H +L FVI    F ++M N    + F+ST  L   +N
Sbjct: 18  HGILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSN 54


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 599 HPLLAFVIIPSQFRNLMVNSSKSFSFISTVGLA*DNN 709
           H +L FVI    F + M N    + F+ST  L   +N
Sbjct: 52  HGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSN 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,511
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)