Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14g01
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 50 2e-06
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 45 5e-05
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.052
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 33 0.27
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 5.9
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 28 5.9
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 5.9
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 5.9
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 28 7.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.8
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.8
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 7.8
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 7.8
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/144 (26%), Positives = 65/144 (45%)
Frame = -3
Query: 688 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 509
++ L SY YL + YF+ AK F++ SD+ E L++ RGG++
Sbjct: 21 NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD 80
Query: 508 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 329
+ D E G + A AL +K E + +H + +DA +T +I
Sbjct: 81 IQKPEND-------EWGTALKAFEAALALEKFNNESLLKLHSTAGNH----NDAHLTDFI 129
Query: 328 EEEFVSQQADTIRSLAGHTSDLKR 257
EE+++ +Q +I A ++LKR
Sbjct: 130 EEKYLDEQVKSINEFARMVANLKR 153
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 45.2 bits (102), Expect = 5e-05
Identities = 35/141 (24%), Positives = 65/141 (46%)
Frame = -3
Query: 679 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 500
L SY YL +++F+ AK F++ SD+ L++ RGG++ +
Sbjct: 24 LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNI 81
Query: 499 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 320
K +K E G + A AL ++ + +H + +D A +T YI+E+
Sbjct: 82 QKPEKD-----EWGTVLEAFEAALALERANNASLLKLHGIAEQRND----AHLTNYIQEK 132
Query: 319 FVSQQADTIRSLAGHTSDLKR 257
++ +Q +I A H +++KR
Sbjct: 133 YLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.052
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 385 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 230
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -3
Query: 520 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 341
D S+HTT S TVE H++ ++A ++ T + E + FI + + + L+ A
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682
Query: 340 TQYIEEEFVSQQ-ADTIRSLAGHTSDLKRFITENNG 236
T + E S++ A+ IRS + + +++ +G
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHG 718
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 382 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 233
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 382 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 233
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 107 FRYKYGCLIVMYPFLF*AKNMLCNCF 30
F + YG L+ YPF+F +L CF
Sbjct: 15 FFHSYGLLVSGYPFIFLVSPILVTCF 40
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 331 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 212
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 331 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 212
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 596 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 691
EE+ E V LV++ +GGR +VGT ++ G
Sbjct: 87 EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 408 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 232
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 231 TCLSP 217
LSP
Sbjct: 257 RSLSP 261
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 408 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 232
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 231 TCLSP 217
LSP
Sbjct: 257 RSLSP 261
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 408 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 232
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 231 TCLSP 217
LSP
Sbjct: 257 RSLSP 261
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -3
Query: 544 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNS 365
+T+ G D S L D+G + VG ++ ALA +K + + I RE +
Sbjct: 4372 ITREDGGDDNKSPDELIDDRGRSTGSAVGDKLAALAAFNAARKNAEDALLDITREDGGDD 4431
Query: 364 DLLHDAEITQYI-EEEFVSQQADTI 293
+ D I +EE V++ DT+
Sbjct: 4432 NKSPDELIDDLAKKEETVAKLLDTV 4456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,333
Number of Sequences: 27780
Number of extensions: 288714
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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