Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f24
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    27   1.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   7.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   7.6  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 229 FGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPLVLEP 107
           F E VD +   RQA+ N  NS++++     +  I  ++L+P
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAVLLKP 150


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 202 LPSDLLFLQRAI*TFLRLTNLLETIIFQFYLYCIRE 309
           LPS LL+ ++ +  F  +TNL E  +++  L  +++
Sbjct: 28  LPSTLLYDEKGLRLFDEITNLKEYYLYESELDILKK 63


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 140 CTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 238
           C    + YYAID+++A   F  +RI   SKG +
Sbjct: 473 CMETMEGYYAIDNLIAKCEFLGNRI---SKGMA 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,666
Number of Sequences: 5004
Number of extensions: 21236
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)