Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14f24
         (344 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011526-1|AAS15662.1|   49|Drosophila melanogaster RH17559p pro...    33   0.100
AE014296-667|AAN11567.1|   49|Drosophila melanogaster CG32267-PA...    33   0.100

>BT011526-1|AAS15662.1|   49|Drosophila melanogaster RH17559p
           protein.
          Length = 49

 Score = 33.1 bits (72), Expect = 0.100
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 244 MFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPLVLE 110
           MFRL   +     E+KR A E   N ++ FG + A +R+AP+VL+
Sbjct: 1   MFRLQQSQPDPAEEQKRVAAEVRFNFIL-FGAVIAAVRLAPIVLK 44


>AE014296-667|AAN11567.1|   49|Drosophila melanogaster CG32267-PA
           protein.
          Length = 49

 Score = 33.1 bits (72), Expect = 0.100
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 244 MFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPLVLE 110
           MFRL   +     E+KR A E   N ++ FG + A +R+AP+VL+
Sbjct: 1   MFRLQQSQPDPAEEQKRVAAEVRFNFIL-FGAVIAAVRLAPIVLK 44


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,101
Number of Sequences: 53049
Number of extensions: 206246
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)